Browse Element(s) Details


OsAffx.18810.1.S1_at

Description tigr:9639.m01135
TID=OsAffx.18810.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1190010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11860NANA11+6577193..6580304retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11870Os.49724.1.A1_at1/1111+6583989..6585195hypothetical protein
LOC_Os11g11880OsAffx.24795.1.S1_at1/1111+6586654..6590633retrotransposon protein, putative, LINE subclass
LOC_Os11g11880OsAffx.8098.1.S1_at1/1111+6586654..6590633retrotransposon protein, putative, LINE subclass
LOC_Os11g11890OsAffx.18809.1.S1_at11/1111+6591843..6598479Protein kinase domain containing protein, expressed
LOC_Os11g11890Os.31112.3.S1_at1/1111+6591843..6598479Protein kinase domain containing protein, expressed
LOC_Os11g11900OsAffx.18810.1.S1_at10/1111+6599820..6601191hypothetical protein
LOC_Os11g11920Os.56301.1.S1_at11/1111+6601895..6611496Nitrate-induced NOI protein, expressed
LOC_Os11g11930NANA11+6613654..6613966hypothetical protein
LOC_Os11g11940Os.20102.1.S1_s_at11/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940OsAffx.18811.1.S1_at9/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940Os.20102.1.S1_at6/1111+6617193..6624459NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18810.1.S1_at--504--1451Chr11:6601121..6601145 (25 bp)
AGAAGCTCTTGCTGATCAACCTGCA
LOC_Os11g11900
OsAffx.18810.1.S1_at--782--9051NONE
TGCATGTTGCAGAGCCCAGGATTTT
NONE
OsAffx.18810.1.S1_at--236--3431Chr11:6600531..6600552 (22 bp)
CAGAGCCCAGGATTTTGATTATGAT
LOC_Os11g11900
OsAffx.18810.1.S1_at--941--8871Chr11:6600503..6600527 (25 bp)
TGATGGCACCATGTCTCAGGCTGAA
LOC_Os11g11900
OsAffx.18810.1.S1_at--733--9631Chr11:6600488..6600512 (25 bp)
TCAGGCTGAATTTCCTTGTGACATG
LOC_Os11g11900
OsAffx.18810.1.S1_at--339--5671Chr11:6600053..6600493 (25 bp)
GACATGAGTGTCAATCTGAGGCGAC
LOC_Os11g11900
OsAffx.18810.1.S1_at--1117--9731Chr11:6600043..6600064 (22 bp)
TCAATCTGAGGCGACCGGTGGCTTG
LOC_Os11g11900
OsAffx.18810.1.S1_at--1121--491Chr11:6599985..6600009 (25 bp)
ATCCCGAACCGGTGGCAAAGGCTGC
LOC_Os11g11900
OsAffx.18810.1.S1_at--12--7631Chr11:6599956..6599980 (25 bp)
GGGACAGCCAAATCTGGCCATGTAG
LOC_Os11g11900
OsAffx.18810.1.S1_at--663--731Chr11:6599937..6599961 (25 bp)
ATGTAGGTCCAGATTTGGCGGCTTC
LOC_Os11g11900
OsAffx.18810.1.S1_at--344--211Chr11:6599925..6599949 (25 bp)
ATTTGGCGGCTTCCGCACATCTTGG
LOC_Os11g11900
Target Sequence 
AGAAGCTCTTGCTGATCAACCTGCACAAAGACTTCAAAGTTCAATGGAATGGTAATGGGATGCACCAGAAGATGCTGCAT
GTTGCAGAGCCCAGGATTTTGATTATGATGACTGATGGCACCATGTCTCAGGCTGAATTTCCTTGTGACATGAGTGTCAA
TCTGAGGCGACCGGTGGCTTGGCCCTCCTCCCCACCCAGTGCCGACAGGCTCCCATCCCGAACCGGTGGCAAAGGCTGCA
CGGGGGACAGCCAAATCTGGCCATGTAGGTCCAGATTTGGCGGCTTCCGCACATCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis