Browse Element(s) Details


OsAffx.18811.1.S1_at

Description tigr:9639.m01140
TID=OsAffx.18811.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g119409/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11890OsAffx.18809.1.S1_at11/1111+6591843..6598479Protein kinase domain containing protein, expressed
LOC_Os11g11890Os.31112.3.S1_at1/1111+6591843..6598479Protein kinase domain containing protein, expressed
LOC_Os11g11900OsAffx.18810.1.S1_at10/1111+6599820..6601191hypothetical protein
LOC_Os11g11920Os.56301.1.S1_at11/1111+6601895..6611496Nitrate-induced NOI protein, expressed
LOC_Os11g11930NANA11+6613654..6613966hypothetical protein
LOC_Os11g11940Os.20102.1.S1_s_at11/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940OsAffx.18811.1.S1_at9/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940Os.20102.1.S1_at6/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11950Os.21562.1.S1_at5/1111+6627427..6630131NB-ARC domain containing protein, expressed
LOC_Os11g11960OsAffx.30939.2.S1_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11960Os.49400.1.S1_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11960Os.49400.1.S2_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11970OsAffx.7086.1.S1_at11/1111+6641902..6642609expressed protein
LOC_Os11g11980Os.11916.1.S1_at10/1111+6644543..6645681expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18811.1.S1_at--1088--5611Chr11:6621033..6621057 (25 bp)
GACAAACAGAACTATCCTACCAGTA
LOC_Os11g11940
OsAffx.18811.1.S1_at--101--571Chr11:6621046..6621070 (25 bp)
ATCCTACCAGTAATATGTCACGTGC
LOC_Os11g11940
OsAffx.18811.1.S1_at--562--271Chr11:6621058..6621082 (25 bp)
ATATGTCACGTGCAATGGTTTCCCC
LOC_Os11g11940
OsAffx.18811.1.S1_at--989--7331Chr11:6621067..6621091 (25 bp)
GTGCAATGGTTTCCCCTGCTTTGAC
LOC_Os11g11940
OsAffx.18811.1.S1_at--1057--9071Chr11:6621083..6621107 (25 bp)
TGCTTTGACTGAGCCATGCAGCGCT
LOC_Os11g11940
OsAffx.18811.1.S1_at--505--10271Chr11:6621086..6621110 (25 bp)
TTTGACTGAGCCATGCAGCGCTGGG
LOC_Os11g11940
OsAffx.18811.1.S1_at--852--2971Chr11:6621111..6621135 (25 bp)
AATGGTGTGGAGTCCTCTTGTGCCT
LOC_Os11g11940
OsAffx.18811.1.S1_at--1154--9571NONE
TCTTGTGCCTGACGACACGTACATT
NONE
OsAffx.18811.1.S1_at--752--7271NONE
GTGCCTGACGACACGTACATTGGAA
NONE
OsAffx.18811.1.S1_at--989--8811Chr11:6624304..6624328 (25 bp)
TGTTGTTCTTTGTTGTTAGTGCTTG
LOC_Os11g11940
OsAffx.18811.1.S1_at--784--6731Chr11:6624308..6624332 (25 bp)
GTTCTTTGTTGTTAGTGCTTGTAAT
LOC_Os11g11940
Target Sequence 
GACAAACAGAACTATCCTACCAGTAATATGTCACGTGCAATGGTTTCCCCTGCTTTGACTGAGCCATGCAGCGCTGGGAA
TGGTGTGGAGTCCTCTTGTGCCTGACGACACGTACATTGGAAGAGTTGTTTGTGGATTGTCATTGCTCTGAGCTGATTTA
CTGTGTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATTTCAACGTTGAGAAGAT
ATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCCTTTGTACTTCAATTGCAATTTGCAAGGTTTGTCTTT
CTTCGATTCAAATCACTGGACATCTGTCTGGTCAATTTGCAAGGTTTGTCTTTCTTCAATTCAAATCACTGGACATCTGT
CTGGTCAAAATGAAGTTCACCATGTTGTTCTTTGTTGTTAGTGCTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis