Browse Element(s) Details


Os.52108.1.S1_at

Description gb:AK064733.1
DB_XREF= gi:32974751
TID=Os.52108.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C04, full insert sequence.
FL= gb:AK064733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3013011/11MAP3K-like protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30110OsAffx.20387.1.S1_x_at1/113+17136589..17143197retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30120OsAffx.13118.1.S1_at11/113+17152366..17153256expressed protein
LOC_Os03g30130Os.52108.1.S1_at11/113+17162224..17165521MAP3K-like protein kinase, putative, expressed
LOC_Os03g30150OsAffx.3368.1.S1_at10/113+17168457..17170611hypothetical protein
LOC_Os03g30160NANA3+17171270..17172471Kelch motif family protein
LOC_Os03g30170NANA3+17174322..17176996retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30180OsAffx.22722.1.S1_x_at1/113+17177489..17179797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30190OsAffx.10496.1.S1_at1/113+17180303..17183412retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52108.1.S1_at--917--6251Chr03:17163246..17163270 (25 bp)
GATGGGCTAATTTACTCGCAGTTGA
LOC_Os03g30130
Os.52108.1.S1_at--592--10331Chr03:17163236..17163260 (25 bp)
TTTACTCGCAGTTGATTACTATAAG
LOC_Os03g30130
Os.52108.1.S1_at--376--7571Chr03:17163070..17163094 (25 bp)
GGGCGCATTCCAAGCGACTGATTTG
LOC_Os03g30130
Os.52108.1.S1_at--1107--3231Chr03:17163060..17163084 (25 bp)
CAAGCGACTGATTTGCTCAATGGCA
LOC_Os03g30130
Os.52108.1.S1_at--248--6531Chr03:17163051..17163075 (25 bp)
GATTTGCTCAATGGCAGACTCCTGT
LOC_Os03g30130
Os.52108.1.S1_at--199--3211Chr03:17163043..17163067 (25 bp)
CAATGGCAGACTCCTGTGTGGATGC
LOC_Os03g30130
Os.52108.1.S1_at--1023--3411Chr03:17163037..17163061 (25 bp)
CAGACTCCTGTGTGGATGCCAGGAT
LOC_Os03g30130
Os.52108.1.S1_at--587--6351Chr03:17163023..17163047 (25 bp)
GATGCCAGGATGTCAGGGCTTGCTC
LOC_Os03g30130
Os.52108.1.S1_at--54--771Chr03:17162885..17163038 (25 bp)
ATGTCAGGGCTTGCTCGCGAGGATC
LOC_Os03g30130
Os.52108.1.S1_at--705--2811Chr03:17162270..17162294 (25 bp)
AAGATAGCTCTTAGTTGTAATGGAC
LOC_Os03g30130
Os.52108.1.S1_at--908--4811Chr03:17162264..17162288 (25 bp)
GCTCTTAGTTGTAATGGACTTTTTC
LOC_Os03g30130
Target Sequence 
GATGGGCTAATTTACTCGCAGTTGATTACTATAAGAGAAGTGATGGAGGGGGCGCATTCCAAGCGACTGATTTGCTCAAT
GGCAGACTCCTGTGTGGATGCCAGGATGTCAGGGCTTGCTCGCGAGGATCTGGTGTAATATGTTCTTCATGAACCCTGGG
GAAGTAGGATTTGATTGGAGTGGCACATCCACATAGAAAAAGTGTTTATGATGTGATGATTCAGAGATTTAGCCTCAAGA
CAACATTGTAGGATGCAGATTACCATAAACTTGAAAGTGATGGATTGACCTCCTCTTGTGAATAGTGAATTCGTTGCAAA
TACTTTATAGTGGGAGTGGAGGTGTTATCTGAAAGAAGAATAATTCGATTTTTGGGCCACATCGCCACGACAATAATATG
TCATGTAAAAACACTTTTAAGTTCCAACCAAGGTTGAAAAATGAACTGGTGGTTCAAGGTTTAATATTAACAGGTTTCGA
TGTTTAGCACATTCTATATTGTAATGAAATTGTTGTAACTTTTTAAAAGATAGCTCTTAGTTGTAATGGACTTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis