Browse Element(s) Details


OsAffx.13118.1.S1_at

Description tigr:9631.m02946
TID=OsAffx.13118.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3012011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30092Os.50865.1.S1_at10/113+17127395..17129107expressed protein
LOC_Os03g30100NANA3+17133846..17136361retrotransposon protein, putative, unclassified
LOC_Os03g30110OsAffx.20387.1.S1_x_at1/113+17136589..17143197retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30120OsAffx.13118.1.S1_at11/113+17152366..17153256expressed protein
LOC_Os03g30130Os.52108.1.S1_at11/113+17162224..17165521MAP3K-like protein kinase, putative, expressed
LOC_Os03g30150OsAffx.3368.1.S1_at10/113+17168457..17170611hypothetical protein
LOC_Os03g30160NANA3+17171270..17172471Kelch motif family protein
LOC_Os03g30170NANA3+17174322..17176996retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30180OsAffx.22722.1.S1_x_at1/113+17177489..17179797retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13118.1.S1_at--1112--5931Chr03:17152709..17152733 (25 bp)
GAGCAGCGAGACCACGACCTACAAC
LOC_Os03g30120
OsAffx.13118.1.S1_at--200--9151Chr03:17152753..17152777 (25 bp)
TGCCCAAGATGCAGGTACCCTCGTC
LOC_Os03g30120
OsAffx.13118.1.S1_at--838--5891Chr03:17152790..17152814 (25 bp)
GAGCGGCCGTGCTAGCATCGACGTC
LOC_Os03g30120
OsAffx.13118.1.S1_at--342--8391Chr03:17153045..17153069 (25 bp)
GGCGACATCAACAAGGTACGGATCT
LOC_Os03g30120
OsAffx.13118.1.S1_at--289--3971Chr03:17153063..17153087 (25 bp)
CGGATCTCATCAGGTGCTAGCAGGT
LOC_Os03g30120
OsAffx.13118.1.S1_at--471--7191Chr03:17153100..17153124 (25 bp)
GTCGGCGATGGTGCATGTTCTGATT
LOC_Os03g30120
OsAffx.13118.1.S1_at--293--7651Chr03:17153125..17153149 (25 bp)
GGGAGAGCGACTCTAGCTCTGATCT
LOC_Os03g30120
OsAffx.13118.1.S1_at--854--3771Chr03:17153141..17153165 (25 bp)
CTCTGATCTGTTCGAGCTGGATCTT
LOC_Os03g30120
OsAffx.13118.1.S1_at--1--4731Chr03:17153156..17153180 (25 bp)
GCTGGATCTTGAAATCACCTGACAT
LOC_Os03g30120
OsAffx.13118.1.S1_at--342--5671Chr03:17153176..17153200 (25 bp)
GACATGATATGATCTTTTACTCTCT
LOC_Os03g30120
OsAffx.13118.1.S1_at--665--10571Chr03:17153201..17153225 (25 bp)
TTCTTTCCAGCCGATTGGTTTTACT
LOC_Os03g30120
Target Sequence 
GAGCAGCGAGACCACGACCTACAACTACAACGACGACGACAACCTGCCCAAGATGCAGGTACCCTCGTCGTCGTCCACCT
CGAGCGGCCGTGCTAGCATCGACGTCGCCGCGGCTGCAGCTACCGTGCACGGCGGCGGCGGTGGCCGCCATGACGACGAC
GATCTGGGCGTGGATGCGATGTGGGAGGATCGGAGGCTGCAGGGTGTCAGGGTTGTGAGGTGCGGGCGCTGCGACGAGGA
GCGGTGGGTGGTGAGGTGCGGCGCTTGTTGTGCTTGGGAGGAGGAGGAGGAGGAGCACCACCATGGCCATGAAAAGAAGG
CCATTCTTGCTGCTGCGGCGACATCAACAAGGTACGGATCTCATCAGGTGCTAGCAGGTGATCGAGAGGTTGTCGGCGAT
GGTGCATGTTCTGATTGGGAGAGCGACTCTAGCTCTGATCTGTTCGAGCTGGATCTTGAAATCACCTGACATGATATGAT
CTTTTACTCTCTTTCTTTCCAGCCGATTGGTTTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis