Browse Element(s) Details


Os.50865.1.S1_at

Description gb:AK059068.1
DB_XREF= gi:32969086
TID=Os.50865.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H01, full insert sequence.
FL= gb:AK059068.1 gb:AK100793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3009210/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30070NANA3+17102286..17105618transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30080Os.14491.2.S1_x_at5/113+17107202..17112018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30080Os.47463.1.S1_x_at5/113+17107202..17112018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30084OsAffx.5807.1.S1_at1/113+17114433..17115134hypothetical protein
LOC_Os03g30088OsAffx.25292.1.S1_at11/113+17116893..17120104hypothetical protein
LOC_Os03g30092Os.50865.1.S1_at10/113+17127395..17129107expressed protein
LOC_Os03g30100NANA3+17133846..17136361retrotransposon protein, putative, unclassified
LOC_Os03g30110OsAffx.20387.1.S1_x_at1/113+17136589..17143197retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30120OsAffx.13118.1.S1_at11/113+17152366..17153256expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50865.1.S1_at--639--4811Chr03:17129048..17129072 (25 bp)
GCTCTTTCTCCCGTGGTGAACGAAA
LOC_Os03g30092
Os.50865.1.S1_at--596--9251NONE
TCCTCGCAGAGAACGTCATTGGGCA
NONE
Os.50865.1.S1_at--843--3971Chr03:17127760..17127784 (25 bp)
CGGTGATCTTCGTATTGTGGCTTGC
LOC_Os03g30092
Os.50865.1.S1_at--1072--8651Chr03:17127745..17127769 (25 bp)
TGTGGCTTGCTCACAATGCAAAGGA
LOC_Os03g30092
Os.50865.1.S1_at--618--8011Chr03:17127702..17127726 (25 bp)
GGAGGACTATTCACATTTGGCATGC
LOC_Os03g30092
Os.50865.1.S1_at--409--2831Chr03:17127637..17127661 (25 bp)
AAGTAACTTGGTTCCTTGCACAAAT
LOC_Os03g30092
Os.50865.1.S1_at--68--3271Chr03:17127617..17127641 (25 bp)
CAAATTGCCGTTCTAAAGGCCGCCT
LOC_Os03g30092
Os.50865.1.S1_at--228--2951Chr03:17127602..17127626 (25 bp)
AAGGCCGCCTTTTGTGTCCAGAGTG
LOC_Os03g30092
Os.50865.1.S1_at--913--7291Chr03:17127580..17127604 (25 bp)
GTGCTCCAAGGTTAGGTGATTCAGT
LOC_Os03g30092
Os.50865.1.S1_at--535--3131Chr03:17127534..17127558 (25 bp)
AATTTTCTATCACCACACATGTAGG
LOC_Os03g30092
Os.50865.1.S1_at--826--2911Chr03:17127438..17127462 (25 bp)
AAGGATGCTTATTCCATTTTCTTTT
LOC_Os03g30092
Target Sequence 
GCTCTTTCTCCCGTGGTGAACGAAAGAAGGTGGTTGGAGGGGGGCATCCGAGCATGGAGGGGCTNACGTCCAGCGAGATC
GCCGGCTTCGGGGTGGGAGCCCTGCTGGTGTGCGCCACCATCGCCGCCCAGAGAGTCGACGGCTTCATCGCCTCCTCGCA
GAGAACGTCATTGGGCATGTGCAAGAAGTGCGGTGATCTTCGTATTGTGGCTTGCTCACAATGCAAAGGAGTAGGTTCTG
TTAGGAAAGGAGGACTATTCACATTTGGCATGCTAGATGATATTTATGAATCACTTGGAGCTGAAACAAAGACAAGTAAC
TTGGTTCCTTGCACAAATTGCCGTTCTAAAGGCCGCCTTTTGTGTCCAGAGTGCTCCAAGGTTAGGTGATTCAGTTCTGG
TGATGTACAGAGATACAATTTTCTATCACCACACATGTAGGTGTTGTTTCAGAACTGTGGTTTAAGATATACTATATCAT
CTTCATCAAAGAATTATGGCATGTACTGAACTAAGGATGCTTATTCCATTTTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis