Browse Element(s) Details


Os.52155.1.S1_at

Description gb:AK065364.1
DB_XREF= gi:32975382
TID=Os.52155.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013007K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013007K15, full insert sequence.
FL= gb:AK065364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3018011/11F-box family protein, putative, expressed
LOC_Os04g302001/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30150Os.46012.2.S1_x_at8/114+17798259..17802482retrotransposon protein, putative, unclassified
LOC_Os04g30150Os.27088.1.A1_x_at5/114+17798259..17802482retrotransposon protein, putative, unclassified
LOC_Os04g30150Os.46012.3.S1_x_at5/114+17798259..17802482retrotransposon protein, putative, unclassified
LOC_Os04g30160Os.53439.1.S1_at10/114+17813628..17818005Calcium binding EGF domain containing protein, expressed
LOC_Os04g30170NANA4+17823865..17824480hypothetical protein
LOC_Os04g30180Os.52155.1.S1_at11/114+17824808..17827711F-box family protein, putative, expressed
LOC_Os04g30190OsAffx.25962.1.S1_at11/114+17829789..17835534transposon protein, putative, Mutator sub-class
LOC_Os04g30200Os.52155.1.S1_at1/114+17837152..17838621F-box domain containing protein, expressed
LOC_Os04g30210Os.18061.1.S1_at11/114+17840338..17843102F-box domain containing protein, expressed
LOC_Os04g30220NANA4+17844686..17845063hypothetical protein
LOC_Os04g30230OsAffx.26251.1.S1_at11/114+17850427..17852199F-box family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52155.1.S1_at--167--7472Chr04:17827176..17827200 (25 bp)
GTGTGCAGCTAGATCAGTCCAGTAC
LOC_Os04g30180
Os.52155.1.S1_at--595--9891Chr04:17827198..17827222 (25 bp)
TACTTTGTCAACTCTGCCGGATCAT
LOC_Os04g30180
Os.52155.1.S1_at--576--7951Chr04:17827216..17827240 (25 bp)
GGATCATGTGCTGCCCATTTTAAAA
LOC_Os04g30180
Os.52155.1.S1_at--451--8791Chr04:17827259..17827283 (25 bp)
TGTTAATTCGTTGCTGACCGCACAC
LOC_Os04g30180
Os.52155.1.S1_at--56--2651Chr04:17827326..17827350 (25 bp)
AACCATATCGTCTCTGTGATCTGAT
LOC_Os04g30180
Os.52155.1.S1_at--584--8951Chr04:17827374..17827398 (25 bp)
TGAACTTGATTTTACTTTGCCCCTT
LOC_Os04g30180
Os.52155.1.S1_at--371--8811Chr04:17827400..17827424 (25 bp)
TGTTCCTGTTATTCTCTCTAAGCAT
LOC_Os04g30180
Os.52155.1.S1_at--1121--6011Chr04:17827503..17827527 (25 bp)
GAGTAGTCTCCAGCGATCGGAATTT
LOC_Os04g30180
Os.52155.1.S1_at--474--9391Chr04:17827519..17827543 (25 bp)
TCGGAATTTTTCACTTTGGCGTCAA
LOC_Os04g30180
Os.52155.1.S1_at--134--6631Chr04:17827548..17827572 (25 bp)
GTTGGTATCCTTTGCATTTATCGTG
LOC_Os04g30180
Os.52155.1.S1_at--224--7071Chr04:17827682..17827706 (25 bp)
GTAATCTTATCCTGAGTTGACCCAC
LOC_Os04g30180
Target Sequence 
GTGTGCAGCTAGATCAGTCCAGTACTTTGTCAACTCTGCCGGATCATGTGCTGCCCATTTTAAAAGACTGCATTGATTGA
AGCTGTTAATTCGTTGCTGACCGCACACCATCGGTGGATATCTCAGATGGAGCTGTTGCTTTTGCTGTTAAACCATATCG
TCTCTGTGATCTGATTTTTCAGTTTTCACTGTCATTTTTGAACTTGATTTTACTTTGCCCCTTTTGTTCCTGTTATTCTC
TCTAAGCATAAGAGCAACTGAGCAAACCATATGATGATGTACTCTGCAGGCATCTCATCACTCTGTGTCCACAGCTAATG
TTCAGAAGAGTAGTCTCCAGCGATCGGAATTTTTCACTTTGGCGTCAAACTTGTTGGTATCCTTTGCATTTATCGTGGTT
TTCAACTTGTTATAGTTTTAGTTGCAAATATATCTTTCATCAAATTTGGGAATGCCTGATCAGTTCTTACACATAAACAA
CATTTGGCTGGTACTACGTGTAATGTGTAATCTTATCCTGAGTTGACCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis