Browse Element(s) Details


Os.52191.1.A1_at

Description gb:AK065535.1
DB_XREF= gi:32975553
TID=Os.52191.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013025J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025J24, full insert sequence.
FL= gb:AK065535.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3885011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38820OsAffx.20015.1.S1_at10/1112+23825019..23825937hypothetical protein
LOC_Os12g38820OsAffx.20015.1.S1_x_at9/1112+23825019..23825937hypothetical protein
LOC_Os12g38820Os.52861.1.S1_at4/1112+23825019..23825937hypothetical protein
LOC_Os12g38830NANA12+23827102..23827452hypothetical protein
LOC_Os12g38840Os.14491.2.S1_x_at1/1112+23830041..23832899transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g38850Os.52191.1.A1_at11/1112+23846311..23851430expressed protein
LOC_Os12g38860OsAffx.32087.1.S1_at11/1112+23851864..23855278Protein kinase domain containing protein, expressed
LOC_Os12g38870Os.16324.1.S1_at11/1112+23859127..23864684expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52191.1.A1_at--982--10631Chr12:23850095..23850119 (25 bp)
TTCGCGACCTCAACACAATTTTTAT
LOC_Os12g38850
Os.52191.1.A1_at--545--5471Chr12:23851012..23851036 (25 bp)
GAACTCCCTGAGAATGTCCTATGCT
LOC_Os12g38850
Os.52191.1.A1_at--1120--6091Chr12:23851052..23851076 (25 bp)
GAGTCGATTTCGTCGATCATGGGCA
LOC_Os12g38850
Os.52191.1.A1_at--694--411Chr12:23851067..23851091 (25 bp)
ATCATGGGCAGATACCGACGCTCTT
LOC_Os12g38850
Os.52191.1.A1_at--313--5731Chr12:23851105..23851129 (25 bp)
GACTGACATTTTAACCGGCATGCTA
LOC_Os12g38850
Os.52191.1.A1_at--532--4611Chr12:23851178..23851202 (25 bp)
GCGACCACAAGTTCTGTCCTGTGAA
LOC_Os12g38850
Os.52191.1.A1_at--996--5531Chr12:23851200..23851224 (25 bp)
GAAACTTGATGAACTCACCTTGGTT
LOC_Os12g38850
Os.52191.1.A1_at--262--5491Chr12:23851235..23851259 (25 bp)
GAACATGGCATGGTTGCTTCTTCGC
LOC_Os12g38850
Os.52191.1.A1_at--1099--10551Chr12:23851252..23851276 (25 bp)
TTCTTCGCTCTGGTCCATGAGATCA
LOC_Os12g38850
Os.52191.1.A1_at--245--2571Chr12:23851276..23851300 (25 bp)
AACGGCTCTACTTCAGAGTTCTGTA
LOC_Os12g38850
Os.52191.1.A1_at--1145--8331Chr12:23851389..23851413 (25 bp)
GGCTGGTACCAATCAATCTATTCAT
LOC_Os12g38850
Target Sequence 
TTCGCGACCTCAACACAATTTTTATGTGGGACCAANTTNCTTTGNGATAGNCCTTGACGNNCACCGGTTTANCTTCATCT
CAAGGAAAGGGCTTGAAGCGTTTCGAGAAAGGTTGAAACATGGTGTCATTGATCTAGGTTTAACCATACAGGCACAGAAG
CAGGAAGAACTCCCTGAGAATGTCCTATGCTGTGTAAGGCTGAACAGAGTCGATTTCGTCGATCATGGGCAGATACCGAC
GCTCTTGCCTTGCGACGACNNNGACTGACATTTTAACCGGCATGCTAATTTAACTGGATCTGNTGCTTCAGTCAAGAGCA
GTAGGCCAGTAGCAGGCGACCACAAGTTCTGTCCTGTGAAACTTGATGAACTCACCTTGGTTTTGGGAGGGTGAACATGG
CATGGTTGCTTCTTCGCTCTGGTCCATGAGATCAACGGCTCTACTTCAGAGTTCTGTAAAAACCAGCGTACATAGTCATG
CATGTTGTTTGGAAATCTGGTTTGTGGATGAATTCTATGGGAAATTTGTTCTGCAAATCAGGAATTGGCTGGTACCAATC
AATCTATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52191.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis