Browse Element(s) Details


Os.52208.1.S1_at

Description gb:AK065631.1
DB_XREF= gi:32975649
TID=Os.52208.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013029M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029M23, full insert sequence.
FL= gb:AK065631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4599011/11von Willebrand factor type A domain containing protein, expressed
LOC_Os06g380402/11von Willebrand factor type A domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45950OsAffx.7423.1.S1_at11/1111+27297369..27298159NAC-domain containing protein 90, putative, expressed
LOC_Os11g45960OsAffx.10621.1.S1_x_at1/1111+27300098..27300436hypothetical protein
LOC_Os11g45960OsAffx.10621.1.S1_at1/1111+27300098..27300436hypothetical protein
LOC_Os11g45970OsAffx.19399.1.S1_at11/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.16187.1.S1_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.29322.1.S1_x_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45980OsAffx.31503.1.S1_at7/1111+27313501..27317699NB-ARC domain containing protein
LOC_Os11g45990Os.52208.1.S1_at11/1111+27321847..27328435von Willebrand factor type A domain containing protein, expressed
LOC_Os11g46000Os.5809.1.S1_s_at11/1111+27334705..27338317expressed protein
LOC_Os11g46000Os.5809.1.S1_at11/1111+27334705..27338317expressed protein
LOC_Os11g46000Os.54953.1.S1_at11/1111+27334705..27338317expressed protein
LOC_Os11g46010Os.9332.2.S1_at1/1111+27343684..27346656retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46010Os.9332.2.S1_x_at1/1111+27343684..27346656retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46020NANA11+27349580..27352132retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52208.1.S1_at--687--851Chr11:27324973..27324997 (25 bp)
ATGGCGGCGACGATATCCATCACGT
LOC_Os11g45990
Os.52208.1.S1_at--407--6511Chr11:27324984..27325008 (25 bp)
GATATCCATCACGTGATCCGGCAGC
LOC_Os11g45990
Os.52208.1.S1_at--293--1911Chr11:27324994..27325018 (25 bp)
ACGTGATCCGGCAGCGGCTTGAGCT
LOC_Os11g45990
Os.52208.1.S1_at--299--3631Chr11:27325011..27325035 (25 bp)
CTTGAGCTGTGGTCAAAGGTGAGAC
LOC_Os11g45990
Os.52208.1.S1_at--916--5992Chr11:27325031..27325055 (25 bp)
GAGACGCGAGGTGCCGCTCATGTAC
LOC_Os11g45990
Os.52208.1.S1_at--983--4253Chr11:27325065..27325089 (25 bp)
CCGGAGCAGGAAGACGTCCAGCTGA
LOC_Os11g45990
Os.52208.1.S1_at--241--951Chr11:27325072..27325096 (25 bp)
AGGAAGACGTCCAGCTGACCGCCGT
LOC_Os11g45990
Os.52208.1.S1_at--8--6011Chr11:27328292..27328316 (25 bp)
GAGAGCTAGTAATATCCGGCAGTCG
LOC_Os11g45990
Os.52208.1.S1_at--549--9731Chr11:27328301..27328325 (25 bp)
TAATATCCGGCAGTCGTGTGAGTTG
LOC_Os11g45990
Os.52208.1.S1_at--878--1611Chr11:27328352..27328376 (25 bp)
AGCTGGCGGATCTGCTCATTTTCCA
LOC_Os11g45990
Os.52208.1.S1_at--920--3951Chr11:27328358..27328382 (25 bp)
CGGATCTGCTCATTTTCCATTACTG
LOC_Os11g45990
Target Sequence 
ATGGCGGCGACGATATCCATCACGTGATCCGGCAGCGGCTTGAGCTGTGGTCAAAGGTGAGACGCGAGGTGCCGCTCATG
TACCAGCCGTCGCCGGAGCAGGAAGACGTCCAGCTGACCGCCGTGTTCCGGGAGGCGTCGCTGGAGGCCATCGACCGAGC
AATGCACCACGACATCTACCTGGCCGTTGTGCACGTGAGCAACCAGAGGCGATGCTAGATTGCTGTCCACGGCGATCCGG
CGCCAGAAGTGGAATTAGCCGATGAAGCAGCTTGCAAGCATAATGCTTGTTAGCTATATAATTAATCTTATAAGTATTTT
GCCATATGCATGTCTATTGCGTTGATTTGCATGTATTGAACAAGTGTATGAGCTTTGCCTATGTTGCTAGCTCGTAGAGA
TCAATCGATCTGTGTGTATGCATCACGAGATTATGTACTGGAGAGCAGAGAGCTAGTAATATCCGGCAGTCGTGTGAGTT
GTGCCGTTGCCGTTGGCGGCAAGAGCAAGCTGGCGGATCTGCTCATTTTCCATTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis