Browse Element(s) Details


Os.5809.1.S1_at

Description gb:AK070289.1
DB_XREF= gi:32980313
TID=Os.5809.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050F01, full insert sequence.
FL= gb:AK070289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4600011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45970OsAffx.19399.1.S1_at11/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.16187.1.S1_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.29322.1.S1_x_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45980OsAffx.31503.1.S1_at7/1111+27313501..27317699NB-ARC domain containing protein
LOC_Os11g45990Os.52208.1.S1_at11/1111+27321847..27328435von Willebrand factor type A domain containing protein, expressed
LOC_Os11g46000Os.5809.1.S1_s_at11/1111+27334705..27338317expressed protein
LOC_Os11g46000Os.5809.1.S1_at11/1111+27334705..27338317expressed protein
LOC_Os11g46000Os.54953.1.S1_at11/1111+27334705..27338317expressed protein
LOC_Os11g46010Os.9332.2.S1_at1/1111+27343684..27346656retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46010Os.9332.2.S1_x_at1/1111+27343684..27346656retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46020NANA11+27349580..27352132retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46030OsAffx.10496.1.S1_at1/1111+27353868..27356775retrotransposon protein, putative, unclassified
LOC_Os11g46040OsAffx.1646.1.S1_x_at1/1111+27357739..27363219retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g46040OsAffx.22722.1.S1_x_at1/1111+27357739..27363219retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5809.1.S1_at--772--4471Chr11:27337998..27338022 (25 bp)
GCCTGAATCTGATTAATCTCTCTAC
LOC_Os11g46000
Os.5809.1.S1_at--645--471Chr11:27338004..27338028 (25 bp)
ATCTGATTAATCTCTCTACGTTGTT
LOC_Os11g46000
Os.5809.1.S1_at--125--6571Chr11:27338008..27338032 (25 bp)
GATTAATCTCTCTACGTTGTTGAGT
LOC_Os11g46000
Os.5809.1.S1_at--842--9511Chr11:27338014..27338038 (25 bp)
TCTCTCTACGTTGTTGAGTAATAAT
LOC_Os11g46000
Os.5809.1.S1_at--324--9391Chr11:27338050..27338074 (25 bp)
TCGATTGATCGATCCCTGAATAATG
LOC_Os11g46000
Os.5809.1.S1_at--580--8851Chr11:27338055..27338079 (25 bp)
TGATCGATCCCTGAATAATGCGTGG
LOC_Os11g46000
Os.5809.1.S1_at--597--10791Chr11:27338123..27338147 (25 bp)
TTGTTCAGATTCGTATCTACAAGTC
LOC_Os11g46000
Os.5809.1.S1_at--965--6571Chr11:27338130..27338154 (25 bp)
GATTCGTATCTACAAGTCTAGTCTA
LOC_Os11g46000
Os.5809.1.S1_at--42--6911Chr11:27338135..27338159 (25 bp)
GTATCTACAAGTCTAGTCTAGTACT
LOC_Os11g46000
Os.5809.1.S1_at--834--7151Chr11:27338150..27338174 (25 bp)
GTCTAGTACTTATTTTGAACAGAGA
LOC_Os11g46000
Os.5809.1.S1_at--946--2131Chr11:27338168..27338192 (25 bp)
ACAGAGATAGTATTAGCTATTTGCT
LOC_Os11g46000
Target Sequence 
GCCTGAATCTGATTAATCTCTCTACGTTGTTGAGTAATAATATGCCCATCCATCGATTGATCGATCCCTGAATAATGCGT
GGTAGCTGCAGTTGCCTTATCAGCAGGAGAGATTGATGAGGACGTTTGTTCAGATTCGTATCTACAAGTCTAGTCTAGTA
CTTATTTTGAACAGAGATAGTATTAGCTATTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis