Browse Element(s) Details


Os.52223.1.S1_at

Description gb:AK065723.1
DB_XREF= gi:32975741
TID=Os.52223.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52223 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013042N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042N23, full insert sequence.
FL= gb:AK065723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1200011/11NBS-LRR disease resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11970OsAffx.7086.1.S1_at11/1111+6641902..6642609expressed protein
LOC_Os11g11980Os.11916.1.S1_at10/1111+6644543..6645681expressed protein
LOC_Os11g11990OsAffx.30939.1.S1_at10/1111+6651445..6659250NB-ARC domain containing protein, expressed
LOC_Os11g12000Os.52223.1.S1_at11/1111+6663976..6676628NBS-LRR disease resistance protein, putative, expressed
LOC_Os11g12010Os.52020.1.S1_at11/1111+6681134..6683109expressed protein
LOC_Os11g12020NANA11+6685754..6686150NBS-LRR type disease resistance protein, putative
LOC_Os11g12030OsAffx.18813.1.S1_at11/1111+6687915..6689380hypothetical protein
LOC_Os11g12040OsAffx.7091.1.S1_at8/1111+6690946..6693393NB-ARC domain containing protein, expressed
LOC_Os11g12040Os.12614.1.A1_at1/1111+6690946..6693393NB-ARC domain containing protein, expressed
LOC_Os11g12050Os.54085.1.S1_at11/1111+6698615..6704342NBS-LRR type disease resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52223.1.S1_at--649--7951Chr11:6675641..6675665 (25 bp)
GGATACTCTCTTCACGCTTGGAGAA
LOC_Os11g12000
Os.52223.1.S1_at--240--8071Chr11:6675660..6675684 (25 bp)
GGAGAACCTCACTTGTCTAAGACTG
LOC_Os11g12000
Os.52223.1.S1_at--1118--4351Chr11:6675733..6675757 (25 bp)
CCACGCCTGAAGATGCTTGTGCTGA
LOC_Os11g12000
Os.52223.1.S1_at--704--1331Chr11:6675848..6675872 (25 bp)
AGAGTGTCCCTCCTGGCATTGAAAC
LOC_Os11g12000
Os.52223.1.S1_at--866--2411Chr11:6675887..6675911 (25 bp)
AAAAACTCTGGCTGCTCAATCTGCA
LOC_Os11g12000
Os.52223.1.S1_at--1065--9031Chr11:6675959..6675983 (25 bp)
TGCAGCATGTTCCAGAGCTACTCAT
LOC_Os11g12000
Os.52223.1.S1_at--646--7771Chr11:6676029..6676053 (25 bp)
GGTGCATCTGCATTTATCTCTTCAT
LOC_Os11g12000
Os.52223.1.S1_at--294--10111Chr11:6676064..6676088 (25 bp)
TATGGAGCTGTTGGTAGCACTACCT
LOC_Os11g12000
Os.52223.1.S1_at--821--2071Chr11:6676092..6676116 (25 bp)
ACATTGGCTTTCTTATCCATCGGGA
LOC_Os11g12000
Os.52223.1.S1_at--416--3551Chr11:6676109..6676133 (25 bp)
CATCGGGACCTGTAATTTGTTCTGT
LOC_Os11g12000
Os.52223.1.S1_at--1025--7431Chr11:6676181..6676205 (25 bp)
GTGTCCTTTTACTTTTGAACTGCAT
LOC_Os11g12000
Target Sequence 
GGATACTCTCTTCACGCTTGGAGAACCTCACTTGTCTAAGACTGAACAATATACATGGTACAAAAACATTGGTTCTTGAT
GCAAAGGCCTTCCCACGCCTGAAGATGCTTGTGCTGAAGCACATGCCTGATGTCAACCAGATACAAATTATGAATGGTGC
ACTTCCAGTCATTGAAGGTTTGTATATTGTGTTTCTATCAGGGGTGGAGAGTGTCCCTCCTGGCATTGAAACCCTTCGGA
CCCTGAAAAAACTCTGGCTGCTCAATCTGCACAAGAACTTCAGAGCTGACTGGATTGAGAGAGAAATGCAACAGAAAATG
CAGCATGTTCCAGAGCTACTCATGTAGGAGTGCATTGTTTCTTTTTTCCTTCTGTAATGATCTTGGTTGGTGCATCTGCA
TTTATCTCTTCATAGTTCTTAGTTATGGAGCTGTTGGTAGCACTACCTGAAACATTGGCTTTCTTATCCATCGGGACCTG
TAATTTGTTCTGTTGTTTTGGGTGCTTCAGATAGTGATTCTCATCTAAGGACAAGGAACCGTGTCCTTTTACTTTTGAAC
TGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis