Browse Element(s) Details


Os.52229.1.S1_at

Description gb:AK065770.1
DB_XREF= gi:32975788
TID=Os.52229.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042H06, full insert sequence.
FL= gb:AK101348.1 gb:AK065770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4530011/11enoyl-CoA hydratase/isomerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45240NANA5+26178012..26180497flavin monoxygenase-like protein floozy, putative
LOC_Os05g45250NANA5+26184282..26185055transposon protein, putative, unclassified
LOC_Os05g45260OsAffx.27317.1.S1_at11/115+26190033..26191248hypothetical protein
LOC_Os05g45270Os.53442.1.S1_at10/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45270OsAffx.4622.1.S1_at1/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45280Os.5747.1.S1_at9/115+26196261..26199588membrane protein, putative, expressed
LOC_Os05g45290OsAffx.15112.1.S1_at11/115+26201544..26202035hypothetical protein
LOC_Os05g45300Os.52229.1.S1_at11/115+26202553..26205166enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os05g45310Os.18326.1.S1_at11/115+26205668..26208715ER lumen protein retaining receptor, putative, expressed
LOC_Os05g45320Os.50603.1.S1_at11/115+26209089..26211365expressed protein
LOC_Os05g45320Os.36280.1.S1_at10/115+26209089..26211365expressed protein
LOC_Os05g45330NANA5+26212287..26213257expressed protein
LOC_Os05g45340OsAffx.27316.1.S1_at11/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45340OsAffx.7824.1.S1_s_at1/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45350Os.15152.2.S1_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45350Os.15152.1.S1_a_at11/115+26227598..26230909DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0008809molecular_functioncarnitine racemase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52229.1.S1_at--882--3931Chr05:26204605..26204629 (25 bp)
CGGCGTGCTCTACATGAGCGAGATC
LOC_Os05g45300
Os.52229.1.S1_at--1068--8191Chr05:26204454..26204478 (25 bp)
GGAATCGTCGACGTGGTTTGCCCCA
LOC_Os05g45300
Os.52229.1.S1_at--911--8131Chr05:26204369..26204393 (25 bp)
GGAACGGGAACGTGTACTCGTCCAT
LOC_Os05g45300
Os.52229.1.S1_at--972--7431Chr05:26204358..26204382 (25 bp)
GTGTACTCGTCCATTAGAATATCCA
LOC_Os05g45300
Os.52229.1.S1_at--721--1471Chr05:26204343..26204367 (25 bp)
AGAATATCCATGTTCCCTGAGGCTT
LOC_Os05g45300
Os.52229.1.S1_at--453--8871Chr05:26204326..26204350 (25 bp)
TGAGGCTTGCAGGTCCGTCGGAATT
LOC_Os05g45300
Os.52229.1.S1_at--941--6191Chr05:26204278..26204302 (25 bp)
GAGGAATCACTTTGCTTCTAAGCTA
LOC_Os05g45300
Os.52229.1.S1_at--722--5311Chr05:26202695..26202719 (25 bp)
GAAGTGGACCATTGAGCTCTTCTCA
LOC_Os05g45300
Os.52229.1.S1_at--453--151Chr05:26202668..26202692 (25 bp)
ATTATGTGTACATTGGCTAGCCAAG
LOC_Os05g45300
Os.52229.1.S1_at--377--4391Chr05:26202649..26202673 (25 bp)
GCCAAGTAGCCATGGATGCTTTGTA
LOC_Os05g45300
Os.52229.1.S1_at--712--4931Chr05:26202585..26202609 (25 bp)
GCTTGTAAACTGTTGCTCTATCTGC
LOC_Os05g45300
Target Sequence 
CGGCGTGCTCTACATGAGCGAGATCGACATCGGCCTCCCGCTCCCGCCCTACTTCGTGGCCATCCTCCGCGCCAAGATCA
CCGCCGCGCACGCCCTCCGCGACGTCACCCTCCGCGGCAGGAAGCTCAAGGCCGCGGAGGCCAAGGAGATGGGAATCGTC
GACGTGGTTTGCCCCACCGCCGCTGAAACGGCGGCCGAGGCCGTCAAGCTCGCCGAGCAGTTGGCGGCGCGGAAGTGGAA
CGGGAACGTGTACTCGTCCATTAGAATATCCATGTTCCCTGAGGCTTGCAGGTCCGTCGGAATTGTCGAGGAGAGCGATG
AGGAGAAGAGGAATCACTTTGCTTCTAAGCTATGAGGATGTGAAAGGGATTCTGTGGAAGTGGACCATTGAGCTCTTCTC
AACATTATGTGTACATTGGCTAGCCAAGTAGCCATGGATGCTTTGTATGAAGGACCAAATAATCCAGTATATATAATTTC
TGGAAAGCTTGTAAACTGTTGCTCTATCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis