Browse Element(s) Details


Os.5232.1.A1_at

Description gb:AK059584.1
DB_XREF= gi:32969602
TID=Os.5232.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-B08, full insert sequence.
FL= gb:AK059584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3094011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30910NANA7+18293373..18299103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30920Os.56089.1.S1_at1/117+18302725..18303132transposon protein, putative, unclassified
LOC_Os07g30930OsAffx.16500.1.S1_at11/117+18307988..18309961pentatricopeptide, putative, expressed
LOC_Os07g30940Os.5232.1.A1_at11/117+18320091..18322980expressed protein
LOC_Os07g30950Os.54865.1.S1_at10/117+18327264..18329088Taxane 10-beta-hydroxylase, putative, expressed
LOC_Os07g30960OsAffx.5487.1.S1_at10/117+18330234..18332264CTF2A, putative, expressed
LOC_Os07g30970Os.146.1.S1_at11/117+18333178..18335793Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os07g30980Os.9401.1.S1_at11/117+18336521..18349942UvrD/REP helicase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5232.1.A1_at--618--8491Chr07:18322405..18322429 (25 bp)
TGGTTAACCAAGAGACCTCCCCAAG
LOC_Os07g30940
Os.5232.1.A1_at--313--2111Chr07:18322532..18322556 (25 bp)
ACATGAGTTTGCCTGGCTCAAGTCT
LOC_Os07g30940
Os.5232.1.A1_at--735--8311Chr07:18322546..18322570 (25 bp)
GGCTCAAGTCTCATCTGGAAAGGCT
LOC_Os07g30940
Os.5232.1.A1_at--920--3491Chr07:18322601..18322625 (25 bp)
CATGGACCCGGCAAATAGTGAGTAC
LOC_Os07g30940
Os.5232.1.A1_at--1054--7871Chr07:18322664..18322688 (25 bp)
GGTTATTTCTTGTTGTTCGTTGTAT
LOC_Os07g30940
Os.5232.1.A1_at--926--3231Chr07:18322709..18322733 (25 bp)
CAAGCAATATCGATCCTGTGGGTGT
LOC_Os07g30940
Os.5232.1.A1_at--1018--7931Chr07:18322734..18322758 (25 bp)
GGATATGTTACGATCGAGGGCACAC
LOC_Os07g30940
Os.5232.1.A1_at--273--6131Chr07:18322749..18322773 (25 bp)
GAGGGCACACGTACGATACAGTGAT
LOC_Os07g30940
Os.5232.1.A1_at--674--6271Chr07:18322918..18322942 (25 bp)
GATGTACATTTTACCTATCCTAGGA
LOC_Os07g30940
Os.5232.1.A1_at--5--10151Chr07:18322933..18322957 (25 bp)
TATCCTAGGACATTTGACCGGTAAT
LOC_Os07g30940
Os.5232.1.A1_at--746--411Chr07:18322956..18322980 (25 bp)
ATCATTGGCTTTCTACCTTTATGTT
LOC_Os07g30940
Target Sequence 
TGGTTAACCAAGAGACCTCCCCAAGCGGCTTNTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGATTAAACCTA
TTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGA
AAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGC
AAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCC
TGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGT
AGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGC
AAAGNTATAGATTCAGAATCTGTGAAAGTGGAAGATGTACATTTTACCTATCCTAGGACATTTGACCGGTAATCATTGGC
TTTCTACCTTTATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5232.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis