Browse Element(s) Details


Os.9401.1.S1_at

Description gb:AK067461.1
DB_XREF= gi:32977479
TID=Os.9401.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102E06, full insert sequence.
FL= gb:AK067461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3098011/11UvrD/REP helicase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30940Os.5232.1.A1_at11/117+18320091..18322980expressed protein
LOC_Os07g30950Os.54865.1.S1_at10/117+18327264..18329088Taxane 10-beta-hydroxylase, putative, expressed
LOC_Os07g30960OsAffx.5487.1.S1_at10/117+18330234..18332264CTF2A, putative, expressed
LOC_Os07g30970Os.146.1.S1_at11/117+18333178..18335793Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os07g30980Os.9401.1.S1_at11/117+18336521..18349942UvrD/REP helicase family protein, putative, expressed
LOC_Os07g30990OsAffx.5488.1.S1_x_at11/117+18353306..18353945Ubiquitin, putative
LOC_Os07g31000NANA7+18356514..18356864expressed protein
LOC_Os07g31010Os.52939.1.S1_at6/117+18358468..18362000hypothetical protein
LOC_Os07g31020OsAffx.16501.1.S1_at11/117+18369099..18371046hypothetical protein
LOC_Os07g31030OsAffx.16502.1.S1_at11/117+18372801..18374033hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9401.1.S1_at--1086--451Chr07:18337002..18337026 (25 bp)
ATCTCTATGACTTTTCACTGCTTGA
LOC_Os07g30980
Os.9401.1.S1_at--1063--8131Chr07:18336968..18336992 (25 bp)
GGACACATGATTTCAAGCTCAGTCT
LOC_Os07g30980
Os.9401.1.S1_at--642--1571Chr07:18336953..18336977 (25 bp)
AGCTCAGTCTCAGAATTGGGACCAT
LOC_Os07g30980
Os.9401.1.S1_at--1157--8631Chr07:18336937..18336961 (25 bp)
TGGGACCATATATACAGCAACGCTG
LOC_Os07g30980
Os.9401.1.S1_at--278--2091Chr07:18336879..18336903 (25 bp)
ACATATCGATGTACTTTTCCCGTGG
LOC_Os07g30980
Os.9401.1.S1_at--907--10371Chr07:18336865..18336889 (25 bp)
TTTTCCCGTGGACATGGTGTGGTTA
LOC_Os07g30980
Os.9401.1.S1_at--6--2391Chr07:18336836..18336860 (25 bp)
AAACGTCTTGTTACATTACCAGGCT
LOC_Os07g30980
Os.9401.1.S1_at--1124--10451Chr07:18336821..18336845 (25 bp)
TTACCAGGCTGTTCTTGGGCCACAA
LOC_Os07g30980
Os.9401.1.S1_at--234--3991Chr07:18336630..18336654 (25 bp)
CGGGTTATGTGATCATTGCCTCTTG
LOC_Os07g30980
Os.9401.1.S1_at--960--10691Chr07:18336615..18336639 (25 bp)
TTGCCTCTTGTTTTTGCGATGATCC
LOC_Os07g30980
Os.9401.1.S1_at--582--6291Chr07:18336598..18336622 (25 bp)
GATGATCCTTGTACGCTAGTGCCTA
LOC_Os07g30980
Target Sequence 
ATCTCTATGACTTTTCACTGCTTGAACCTGCAGGGGACACATGATTTCAAGCTCAGTCTCAGAATTGGGACCATATATAC
AGCAACGCTGGTNGAAAGTTCCTCATATTAACTGTACATGCTGTACATATCGATGTACTTTTCCCGTGGACATGGTGTGG
TTAGAGCAAACGTCTTGTTACATTACCAGGCTGTTCTTGGGCCACAAGGGCCAACCAAGAAACGAACCGGGCCTTCTCTT
TGGGGAATCTGGCTCGGCCCACAAAATAACCAGCTATGGGAGACTCAGTCACATCCCTCATGCAACGTACATCCTCCGTC
TTGTAAAAAAAATATCAACTTCTAGCTATGTACTTTATGGGATGGATTGAGTACGGGTTATGTGATCATTGCCTCTTGTT
TTTGCGATGATCCTTGTACGCTAGTGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis