Browse Element(s) Details


OsAffx.5488.1.S1_x_at

Description tigr:9635.m03034
TID=OsAffx.5488.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3099011/11Ubiquitin, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30950Os.54865.1.S1_at10/117+18327264..18329088Taxane 10-beta-hydroxylase, putative, expressed
LOC_Os07g30960OsAffx.5487.1.S1_at10/117+18330234..18332264CTF2A, putative, expressed
LOC_Os07g30970Os.146.1.S1_at11/117+18333178..18335793Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os07g30980Os.9401.1.S1_at11/117+18336521..18349942UvrD/REP helicase family protein, putative, expressed
LOC_Os07g30990OsAffx.5488.1.S1_x_at11/117+18353306..18353945Ubiquitin, putative
LOC_Os07g31000NANA7+18356514..18356864expressed protein
LOC_Os07g31010Os.52939.1.S1_at6/117+18358468..18362000hypothetical protein
LOC_Os07g31020OsAffx.16501.1.S1_at11/117+18369099..18371046hypothetical protein
LOC_Os07g31030OsAffx.16502.1.S1_at11/117+18372801..18374033hypothetical protein
LOC_Os07g31040NANA7+18378560..18380977retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0009733biological_processresponse to auxin stimulus
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0045116biological_processprotein neddylation
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5488.1.S1_x_at--1131--9371Chr07:18353352..18353376 (25 bp)
TCGAGGGCAGCGACACCATCGGCGA
LOC_Os07g30990
OsAffx.5488.1.S1_x_at--228--5771Chr07:18353375..18353399 (25 bp)
GACGTCAAGGTCAAGATCCACGACA
LOC_Os07g30990
OsAffx.5488.1.S1_x_at--484--571Chr07:18353390..18353793 (25 bp)
ATCCACGACAAGAACGGCATCCCGG
LOC_Os07g30990
OsAffx.5488.1.S1_x_at--409--8351Chr07:18353792..18353816 (25 bp)
GGCGGACGACCAGCGGCTGATGCAC
LOC_Os07g30990
OsAffx.5488.1.S1_x_at--460--1871Chr07:18353797..18353821 (25 bp)
ACGACCAGCGGCTGATGCACGCCGG
LOC_Os07g30990
OsAffx.5488.1.S1_x_at--863--4491Chr07:18353817..18353841 (25 bp)
GCCGGGAGGCAGCTGGATGATCGAC
LOC_Os07g30990
OsAffx.5488.1.S1_x_at--852--4251Chr07:18353818..18353842 (25 bp)
CCGGGAGGCAGCTGGATGATCGACG
LOC_Os07g30990
OsAffx.5488.1.S1_x_at--108--711Chr07:18353833..18353857 (25 bp)
ATGATCGACGGACGCTGGCCGACTA
LOC_Os07g30990
OsAffx.5488.1.S1_x_at--821--4971Chr07:18353860..18353884 (25 bp)
GCATCCAGACGGAGCACACGCTTCG
LOC_Os07g30990
OsAffx.5488.1.S1_x_at--1036--571Chr07:18353862..18353886 (25 bp)
ATCCAGACGGAGCACACGCTTCGCC
LOC_Os07g30990
OsAffx.5488.1.S1_x_at--19--1411Chr07:18353866..18353890 (25 bp)
AGACGGAGCACACGCTTCGCCTCGC
LOC_Os07g30990
Target Sequence 
TCGAGGGCAGCGACACCATCGGCGACGTCAAGGTCAAGATCCACGACAAGAACGGCATCCCGGCGGACGACCAGCGGCTG
ATGCACGCCGGGAGGCAGCTGGATGATCGACGGACGCTGGCCGACTACGGCATCCAGACGGAGCACACGCTTCGCCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5488.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis