Browse Element(s) Details


Os.52939.1.S1_at

Description gb:AK070002.1
DB_XREF= gi:32980026
TID=Os.52939.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034C21, full insert sequence.
FL= gb:AK070002.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g310106/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30970Os.146.1.S1_at11/117+18333178..18335793Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os07g30980Os.9401.1.S1_at11/117+18336521..18349942UvrD/REP helicase family protein, putative, expressed
LOC_Os07g30990OsAffx.5488.1.S1_x_at11/117+18353306..18353945Ubiquitin, putative
LOC_Os07g31000NANA7+18356514..18356864expressed protein
LOC_Os07g31010Os.52939.1.S1_at6/117+18358468..18362000hypothetical protein
LOC_Os07g31020OsAffx.16501.1.S1_at11/117+18369099..18371046hypothetical protein
LOC_Os07g31030OsAffx.16502.1.S1_at11/117+18372801..18374033hypothetical protein
LOC_Os07g31040NANA7+18378560..18380977retrotransposon protein, putative, unclassified
LOC_Os07g31050NANA7+18381962..18385354retrotransposon protein, putative, unclassified
LOC_Os07g31060NANA7+18386256..18389547retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52939.1.S1_at--188--6671Chr07:18358892..18358916 (25 bp)
GTTGCACTCCTCTCTGATCAGATTT
LOC_Os07g31010
Os.52939.1.S1_at--41--8571Chr07:18358858..18358882 (25 bp)
TGGATAGGTTCTCATCTAGCTTGAC
LOC_Os07g31010
Os.52939.1.S1_at--1084--10751Chr07:18358748..18358862 (25 bp)
TTGACTTCTCCCTACAACATGAACA
LOC_Os07g31010
Os.52939.1.S1_at--951--7911Chr07:18358697..18358721 (25 bp)
GGTTGATCACCCAAGTGCTGGTCAT
LOC_Os07g31010
Os.52939.1.S1_at--338--2511Chr07:18358646..18358670 (25 bp)
AACATCTTTTGGATGGCCTGTGCTA
LOC_Os07g31010
Os.52939.1.S1_at--640--7391Chr07:18358488..18358512 (25 bp)
GTGATGTTGCTTTGTGATGCCCTGG
LOC_Os07g31010
Os.52939.1.S1_at--620--10791Chr07:18358456..18358480 (25 bp)
TTGTTGCTGCTGATCTACGGGATGC
NONE
Os.52939.1.S1_at--1054--2991Chr07:18358406..18358430 (25 bp)
AATGATGCCGTGTGCATGTTGCCAT
NONE
Os.52939.1.S1_at--51--6691Chr07:18358389..18358413 (25 bp)
GTTGCCATAGCCCTGAAGTGATGTT
NONE
Os.52939.1.S1_at--402--4471Chr07:18358269..18358293 (25 bp)
GAATGAGGCCATGTGGTCGCCCGAT
NONE
Os.52939.1.S1_at--1105--4531Chr07:18358251..18358275 (25 bp)
GCCCGATGTTGCTAGCCTGGAGAGA
NONE
Target Sequence 
GTTGCACTCCTCTCTGATCAGATTTGTGGAGGAGTGGATAGGTTCTCATCTAGCTTGACTTCTCCCTACAACATGAACAC
ATTTTTTGATCAACTTTGGTGGTTTGGTTGATCACCCAAGTGCTGGTCATTTTGTCATTAATCATTATGGGGCACCAACA
TCTTTTGGATGGCCTGTGCTAGTTGAGGGTGAGAAAGTCACAGCATGCAGGTCAAGTGGATGTGGTGCTATTATTGGGTG
ATGTTGCTTTGTGATGCCCTGGGTTCCAGTTGTTGCTGCTGATCTACGGGATGCAGCTTGGGGTTGTATGCTGTGAGTAA
ATGATGCCGTGTGCATGTTGCCATAGCCCTGAAGTGATGTTGCTAGTGGAAATGCACTGTATGATGTTGGCTAGACATAA
AACTAAACCTTCAGTTTAATGTGTGTTGTATCGATGAATGGTAAAATTTGGGCTGAGAATGAGGCCATGTGGTCGCCCGA
TGTTGCTAGCCTGGAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis