Browse Element(s) Details


Os.52471.1.S1_at

Description gb:AK067328.1
DB_XREF= gi:32977346
TID=Os.52471.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104C16, full insert sequence.
FL= gb:AK070599.1 gb:AK067328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1040011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10360NANA11+5616833..5618131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10370OsAffx.7062.1.S1_at11/1111+5623357..5624506F-box domain containing protein
LOC_Os11g10384OsAffx.7063.1.S1_at11/1111+5627299..5635856transposon protein, putative, unclassified
LOC_Os11g10400Os.52471.1.S1_at11/1111+5641128..5643884F-box domain containing protein, expressed
LOC_Os11g10410NANA11+5645202..5647405retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10420OsAffx.7064.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.12740.1.S1_x_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S2_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_s_at10/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10430OsAffx.30915.1.S1_at11/1111+5668408..5672123aminotransferase, putative
LOC_Os11g10430OsAffx.30915.1.S1_x_at11/1111+5668408..5672123aminotransferase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52471.1.S1_at--109--5351Chr11:5642345..5642369 (25 bp)
GAAGTTCCTCTCTGCATTCAGTATT
LOC_Os11g10400
Os.52471.1.S1_at--571--6411Chr11:5641550..5641574 (25 bp)
GATCTACTACTCTATCACCATTCAG
LOC_Os11g10400
Os.52471.1.S1_at--1059--9171Chr11:5641490..5641514 (25 bp)
TGCCGTGTTCTGTCTGTAGGTATCA
LOC_Os11g10400
Os.52471.1.S1_at--246--6931Chr11:5641475..5641499 (25 bp)
GTAGGTATCATGTCAGTTCCAGCCA
LOC_Os11g10400
Os.52471.1.S1_at--462--3371Chr11:5641456..5641480 (25 bp)
CAGCCATAGCCCGTAGGGACGGTTT
LOC_Os11g10400
Os.52471.1.S1_at--715--9812Chr11:5641301..5641325 (25 bp)
TAACTCGGATTCATTCTCTCTGGGA
LOC_Os11g10400
Os.52471.1.S1_at--829--5251Chr11:5641270..5641294 (25 bp)
GAATCTGCTACCTTGAGCATAGCTG
LOC_Os11g10400
Os.52471.1.S1_at--1063--4951Chr11:5641254..5641278 (25 bp)
GCATAGCTGGCTCTGTCAATATTGC
LOC_Os11g10400
Os.52471.1.S1_at--1155--211Chr11:5641236..5641260 (25 bp)
ATATTGCTCCGCCTGAAATGTTTAA
LOC_Os11g10400
Os.52471.1.S1_at--475--10131Chr11:5641199..5641223 (25 bp)
TATGCACATTTGATACCCTCTATCC
LOC_Os11g10400
Os.52471.1.S1_at--947--7391Chr11:5641146..5641170 (25 bp)
GTGATATTCTTGTCCATATTCGAAG
LOC_Os11g10400
Target Sequence 
GAAGTTCCTCTCTGCATTCAGTATTCGTNNNNNNNNNNNNNANNNTNTNNANNNTTNNNNNNNNNNNGATCTACTACTCT
ATCACCATTCAGAGGGTTGGTTCTTAATTTGCAGTGACTGACGAGGGTGCCGTGTTCTGTCTGTAGGTATCATGTCAGTT
CCAGCCATAGCCCGTAGGGACGGTTTAGAACTGACGAAATGACCTAGTCAGAATTTGTAATTGCAGGGCCCTAAAAGGGA
TGTGGAAGTGTAGGTAATCTAGTTAGGCCTTATATACCACCCAACTATTCTATGCTATGTCTTTTGGACTCTAGTTTAAC
TCGGATTCATTCTCTCTGGGAAGATATGAATCTGCTACCTTGAGCATAGCTGGCTCTGTCAATATTGCTCCGCCTGAAAT
GTTTAATGAGGGGAGTAGTATGCACATTTGATACCCTCTATCCCAAAATATAAAAACCTATAGTACTATATGTGATATTC
TTGTCCATATTCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis