Browse Element(s) Details


Os.52488.1.S1_at

Description gb:AK067472.1
DB_XREF= gi:32977490
TID=Os.52488.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105J22, full insert sequence.
FL= gb:AK067472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1899011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g18960Os.56815.1.S1_at11/116+10779824..10783834expressed protein
LOC_Os06g18970OsAffx.27699.1.S1_at10/116+10790823..10797650hypothetical protein
LOC_Os06g18970Os.41695.15.S1_s_at7/116+10790823..10797650hypothetical protein
LOC_Os06g18970OsAffx.29202.1.S1_at1/116+10790823..10797650hypothetical protein
LOC_Os06g18980OsAffx.27700.1.S1_at11/116+10802013..10802563expressed protein
LOC_Os06g18990Os.52488.1.S1_at11/116+10805443..10808644expressed protein
LOC_Os06g19000OsAffx.27701.1.S1_at11/116+10809808..10810930hypothetical protein
LOC_Os06g19010Os.49938.1.S1_at10/116+10812017..10815112expressed protein
LOC_Os06g19020OsAffx.27702.1.S1_at10/116+10817801..10818535hypothetical protein
LOC_Os06g19030NANA6+10820537..10821565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19040NANA6+10825032..10829372retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19050OsAffx.15487.1.S1_at11/116+10830872..10833566embryogenesis transmembrane protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52488.1.S1_at--1123--5511Chr06:10805974..10805998 (25 bp)
GAAATACCGGTCTGGCCAATGCATA
LOC_Os06g18990
Os.52488.1.S1_at--852--3011Chr06:10805957..10805981 (25 bp)
AATGCATACGGCCATTTTGCTGGAT
LOC_Os06g18990
Os.52488.1.S1_at--999--251Chr06:10805934..10805958 (25 bp)
ATATGCTCGGTCTCCTGTGTGCTTA
LOC_Os06g18990
Os.52488.1.S1_at--316--10151Chr06:10805855..10805879 (25 bp)
TATCCCTGTGCTGGTGTACATGGCA
LOC_Os06g18990
Os.52488.1.S1_at--1082--9851Chr06:10805839..10805863 (25 bp)
TACATGGCAGCCTGTACAGCGCTAT
LOC_Os06g18990
Os.52488.1.S1_at--819--2151Chr06:10805824..10805848 (25 bp)
ACAGCGCTATCATTTTTCCATAAGG
LOC_Os06g18990
Os.52488.1.S1_at--473--2251Chr06:10805787..10805811 (25 bp)
AAATATCTGCATCGACCTGCCAGGC
LOC_Os06g18990
Os.52488.1.S1_at--921--911Chr06:10805766..10805790 (25 bp)
AGGCATCCACCAACTCATAGAGAAG
LOC_Os06g18990
Os.52488.1.S1_at--706--5391Chr06:10805745..10805769 (25 bp)
GAAGCATCAACATGGCGTCATCCTT
LOC_Os06g18990
Os.52488.1.S1_at--301--591Chr06:10805563..10805587 (25 bp)
ATGCCACAGTTCCTCTACTAGATTT
LOC_Os06g18990
Os.52488.1.S1_at--203--6851Chr06:10805488..10805512 (25 bp)
GTTTGTTCGTGTGTATTTTCCAGGA
LOC_Os06g18990
Target Sequence 
GAAATACCGGTCTGGCCAATGCATACGGCCATTTTGCTGGATATGCTCGGTCTCCTGTGTGCTTACGCTGCAGGCAGCAC
CATGAGGTGGGAGACATCTAGAAATATCATTGCTTTGGTTATCCCTGTGCTGGTGTACATGGCAGCCTGTACAGCGCTAT
CATTTTTCCATAAGGAAGATCAAAAACAAATATCTGCATCGACCTGCCAGGCATCCACCAACTCATAGAGAAGCATCAAC
ATGGCGTCATCCTTTATCAATTTGTTCTAGGAGAAAGAGACTACCTACAGGGAACTAGTTACTATCTTTCTCATTTTGAA
ATAGAAAGCCATCAAGTATGAGTAGAAAAGGACCTGAAGATGGGTGTTGAAGGCATACATACACCCACACCTCCTTCCTA
GCTACTGAACCATGCCACAGTTCCTCTACTAGATTTTCAATTTAATTCAACTGAAGCCATTGTGTATGAATTAGGACGCT
TAAGTTGTTTGTTCGTGTGTATTTTCCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis