Browse Element(s) Details


Os.52546.1.S1_at

Description gb:AK067872.1
DB_XREF= gi:32977890
TID=Os.52546.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123O18, full insert sequence.
FL= gb:AK067872.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3936010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39310Os.50270.1.S1_at11/1111+22902130..22905847NB-ARC domain containing protein, expressed
LOC_Os11g39320Os.49419.1.S1_at11/1111+22906779..22911705NB-ARC domain containing protein, expressed
LOC_Os11g39330NANA11+22914301..22917314NB-ARC domain containing protein
LOC_Os11g39350Os.53674.1.S1_at11/1111+22920527..22925366expressed protein
LOC_Os11g39360Os.52546.1.S1_at10/1111+22925937..22928601pentatricopeptide, putative, expressed
LOC_Os11g39370Os.9292.1.S1_at11/1111+22929909..22935436BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os11g39380NANA11+22942159..22942671hypothetical protein
LOC_Os11g39390OsAffx.19251.1.S1_at11/1111+22943123..22943461hypothetical protein
LOC_Os11g39400OsAffx.31384.1.S1_at11/1111+22952630..22954042hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52546.1.S1_at--666--9831Chr11:22927776..22927800 (25 bp)
TAGAAAGCTCAGTGCCTTGGGAGAT
LOC_Os11g39360
Os.52546.1.S1_at--186--6351Chr11:22927804..22927828 (25 bp)
GATGCTGCCAGTCTTTTTCTTAAAA
LOC_Os11g39360
Os.52546.1.S1_at--437--1851Chr11:22927838..22927862 (25 bp)
ACGAGGATTATGCTGTTGACCATGC
LOC_Os11g39360
Os.52546.1.S1_at--1152--10751Chr11:22927853..22927877 (25 bp)
TTGACCATGCAACTTATACTGGCTT
LOC_Os11g39360
Os.52546.1.S1_at--50--331Chr11:22927868..22927892 (25 bp)
ATACTGGCTTCATCAATTCTTGTTA
LOC_Os11g39360
Os.52546.1.S1_at--913--6491Chr11:22927904..22927928 (25 bp)
GATATGCCCTAGCTTCTGAAATGTC
LOC_Os11g39360
Os.52546.1.S1_at--259--5151Chr11:22927979..22928003 (25 bp)
GCAACAGCCATTGCTTGATCAGAAA
LOC_Os11g39360
Os.52546.1.S1_at--837--5571Chr11:22928000..22928024 (25 bp)
GAAAGGGTGGTGCATTGCTTCTACT
LOC_Os11g39360
Os.52546.1.S1_at--129--7871Chr11:22928217..22928241 (25 bp)
GGTATAGACCTGACTTTCTCAAATG
LOC_Os11g39360
Os.52546.1.S1_at--557--1171NONE
AGTAATGGCATCTTCTTTGTATAAA
NONE
Os.52546.1.S1_at--1009--3271Chr11:22928470..22928494 (25 bp)
CAAAATCCATCTGTGCATTGTATAA
LOC_Os11g39360
Target Sequence 
TAGAAAGCTCAGTGCCTTGGGAGATGTGGATGCTGCCAGTCTTTTTCTTAAAAAAGTTTTGGACGAGGATTATGCTGTTG
ACCATGCAACTTATACTGGCTTCATCAATTCTTGTTATGAAAATAATAGATATGCCCTAGCTTCTGAAATGTCTGAAAAA
TTCTCAAAGAAAATATCTAGCTTTAAAGAAAAAAGATGATTTAGCAACAGCCATTGCTTGATCAGAAAGGGTGGTGCATT
GCTTCTACTGATACAGACAAGAAATTCTACATTCAAGGTATAGACCTGACTTTCTCAAATGGAGTGGGGGAGAACTTGAA
GATAGTAATGGCATCTTCTTTGTATAAAATTCTGTGAGAACTGAGAAGAAACAAGGTCATTCGTTGATTTGATGGAGAAA
TGAAGAACAAGTCTTTCTTGAATACTTGGGAGATAGTAGTCACTAACAAAATCCATCTGTGCATTGTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis