Browse Element(s) Details


Os.53674.1.S1_at

Description gb:AK073861.1
DB_XREF= gi:32983884
TID=Os.53674.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071G16, full insert sequence.
FL= gb:AK073861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3935011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39290Os.47902.1.S1_at9/1111+22893148..22896449Leucine Rich Repeat family protein, expressed
LOC_Os11g39300OsAffx.31383.1.S1_at9/1111+22897537..22900222hypothetical protein
LOC_Os11g39310Os.50270.1.S1_at11/1111+22902130..22905847NB-ARC domain containing protein, expressed
LOC_Os11g39320Os.49419.1.S1_at11/1111+22906779..22911705NB-ARC domain containing protein, expressed
LOC_Os11g39330NANA11+22914301..22917314NB-ARC domain containing protein
LOC_Os11g39350Os.53674.1.S1_at11/1111+22920527..22925366expressed protein
LOC_Os11g39360Os.52546.1.S1_at10/1111+22925937..22928601pentatricopeptide, putative, expressed
LOC_Os11g39370Os.9292.1.S1_at11/1111+22929909..22935436BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os11g39380NANA11+22942159..22942671hypothetical protein
LOC_Os11g39390OsAffx.19251.1.S1_at11/1111+22943123..22943461hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53674.1.S1_at--1157--6491Chr11:22921101..22921125 (25 bp)
GATAGGCTTTATCAAGTTCCTGCCA
LOC_Os11g39350
Os.53674.1.S1_at--216--1231Chr11:22921073..22921097 (25 bp)
AGTTCATTGAGGCTGTCTTCTGCAA
LOC_Os11g39350
Os.53674.1.S1_at--1137--7131Chr11:22921037..22921061 (25 bp)
GTCTTCCCATGCTCTTCAGTAATGA
LOC_Os11g39350
Os.53674.1.S1_at--1034--9653Chr11:22808569..22808592 (24 bp)
TCAGCAATCCATCTTCTTATCAAAT
NONE
Os.53674.1.S1_at--1121--2271Chr11:22920986..22921010 (25 bp)
AAATGCTTCCTGCTAATACTGCGGC
LOC_Os11g39350
Os.53674.1.S1_at--164--9911Chr11:22920970..22920994 (25 bp)
TACTGCGGCCCTTGGGAAATGTGCT
LOC_Os11g39350
Os.53674.1.S1_at--729--3131Chr11:22920891..22920915 (25 bp)
AATTATTTGCGTTACTCCTTCGGTG
LOC_Os11g39350
Os.53674.1.S1_at--873--9431Chr11:22920872..22920896 (25 bp)
TCGGTGGTGAGATTGCTTCCCAACT
LOC_Os11g39350
Os.53674.1.S1_at--917--2531Chr11:22920851..22920875 (25 bp)
AACTCTGCACTTAAAGCCTCATCTA
LOC_Os11g39350
Os.53674.1.S1_at--384--10551Chr11:22920785..22920809 (25 bp)
TTCATTTTACTAGCAATCAGCCCTG
LOC_Os11g39350
Os.53674.1.S1_at--817--6051Chr11:22920575..22920599 (25 bp)
GAGTTAAACCTTGTAGTCACCACTA
LOC_Os11g39350
Target Sequence 
GATAGGCTTTATCAAGTTCCTGCCAATGAGTTCATTGAGGCTGTCTTCTGCAACTTCCTCAGCAGTCTTCCCATGCTCTT
CAGTAATGAATCCTTCAGCAATCCATCTTCTTATCAAATGCTTCCTGCTAATACTGCGGCCCTTGGGAAATGTGCTCAAG
TACAGCAAGCATGTCTTAAGATCAGGTGGCAGATTTTTGTAACAGTGGTTAATTATTTGCGTTACTCCTTCGGTGGTGAG
ATTGCTTCCCAACTCTGCACTTAAAGCCTCATCTACATCAACCAAATGCTGATCCAATGTCAGGTCAATCTTTGATTTCA
TTTTACTAGCAATCAGCCCTGCTACTACTACAATTGCCAAAGGCAGACCCCCACACGTTTTCATGATAATGCGAGCATTA
ATAGGTCTAATGGGACACAGATCATTAGCAGATATTATCTGAAGAAACAAATTGTAGGAGCTCTCTGGATCGAGCTGTTT
GAGCTTGTGCACATGACCTTGTTGACGGCGGAGGCTTCAGCTACAGAGTTAAACCTTGTAGTCACCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis