Browse Element(s) Details


OsAffx.31383.1.S1_at

Description tigr:9639.m03584
TID=OsAffx.31383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to PRO2242
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g393009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39250Os.27343.1.A1_at11/1111+22867253..22874086transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g39260Os.49908.1.S1_at11/1111+22874214..22877337RGH2A, putative
LOC_Os11g39270NANA11+22878808..22884814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g39280Os.56221.1.S1_at11/1111+22888587..22890384expressed protein
LOC_Os11g39290Os.47902.1.S1_at9/1111+22893148..22896449Leucine Rich Repeat family protein, expressed
LOC_Os11g39300OsAffx.31383.1.S1_at9/1111+22897537..22900222hypothetical protein
LOC_Os11g39310Os.50270.1.S1_at11/1111+22902130..22905847NB-ARC domain containing protein, expressed
LOC_Os11g39320Os.49419.1.S1_at11/1111+22906779..22911705NB-ARC domain containing protein, expressed
LOC_Os11g39330NANA11+22914301..22917314NB-ARC domain containing protein
LOC_Os11g39350Os.53674.1.S1_at11/1111+22920527..22925366expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31383.1.S1_at--1160--4151NONE
CCCGATGACCGCTCCTTGGATAAGT
NONE
OsAffx.31383.1.S1_at--488--2851NONE
AAGTCTGCTAAGGTGGTTATTGGAG
NONE
OsAffx.31383.1.S1_at--260--7371Chr11:22899349..22899373 (25 bp)
GTGACTATGACAAACTGTCTTGCAG
LOC_Os11g39300
OsAffx.31383.1.S1_at--546--4131Chr11:22899370..22899394 (25 bp)
GCAGGAAAATTTGAACCGAAGTTCT
LOC_Os11g39300
OsAffx.31383.1.S1_at--248--10491Chr11:22899579..22899821 (25 bp)
TTAATCCTGATGGATGGAGCTCAGT
LOC_Os11g39300
OsAffx.31383.1.S1_at--885--8071Chr11:22900067..22900089 (23 bp)
GGAGCTCAGTGATTGTAGTCACTTT
LOC_Os11g39300
OsAffx.31383.1.S1_at--972--1131Chr11:22900081..22900105 (25 bp)
AGTCACTTTTGTTGGTAATATACGC
LOC_Os11g39300
OsAffx.31383.1.S1_at--519--7831Chr11:22900094..22900118 (25 bp)
GGTAATATACGCTATGCTGACCATA
LOC_Os11g39300
OsAffx.31383.1.S1_at--1085--611Chr11:22900107..22900131 (25 bp)
ATGCTGACCATAGTTTGATGATGAA
LOC_Os11g39300
OsAffx.31383.1.S1_at--926--10111Chr11:22900138..22900162 (25 bp)
TATGAGAGCTATGCTGTCCAAGATT
LOC_Os11g39300
OsAffx.31383.1.S1_at--748--8831Chr11:22900168..22900192 (25 bp)
TGATCTGTTAGTGCGCAATTTAGTT
LOC_Os11g39300
Target Sequence 
CCCGATGACCGCTCCTTGGATAAGTCTGCTAAGGTGGTTATTGGAGGTGGTCAAGATGCTATGAATGTGACTATGACAAA
CTGTCTTGCAGGAAAATTTGAACCGAAGTTCTTTCACAAGATTTTGCAAGAGGAAATTGGTGTTAAAGGCCATTTTGGAC
CAATTAACGTGCTGGCATTTAATCCTGATGGATGGAGCTCAGTGATTGTAGTCACTTTTGTTGGTAATATACGCTATGCT
GACCATAGTTTGATGATGAATGAGAATATGAGAGCTATGCTGTCCAAGATTAAATTTGATCTGTTAGTGCGCAATTTAGT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis