Browse Element(s) Details


Os.49908.1.S1_at

Description gb:AK119331.1
DB_XREF= gi:37988954
TID=Os.49908.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-B07, full insert sequence.
FL= gb:AK119331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3926011/11RGH2A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39220Os.7513.1.S1_at11/1111+22852827..22856982Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
LOC_Os11g39220Os.50057.1.S1_at1/1111+22852827..22856982Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
LOC_Os11g39230OsAffx.7352.1.S1_at11/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.2.S1_x_at9/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.3.S1_x_at8/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.5.S1_x_at6/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.4.S1_x_at1/1111+22859810..22864593hypothetical protein
LOC_Os11g39240NANA11+22865855..22866779hypothetical protein
LOC_Os11g39250Os.27343.1.A1_at11/1111+22867253..22874086transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g39260Os.49908.1.S1_at11/1111+22874214..22877337RGH2A, putative
LOC_Os11g39270NANA11+22878808..22884814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g39280Os.56221.1.S1_at11/1111+22888587..22890384expressed protein
LOC_Os11g39290Os.47902.1.S1_at9/1111+22893148..22896449Leucine Rich Repeat family protein, expressed
LOC_Os11g39300OsAffx.31383.1.S1_at9/1111+22897537..22900222hypothetical protein
LOC_Os11g39310Os.50270.1.S1_at11/1111+22902130..22905847NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49908.1.S1_at--724--2372Chr11:20313116..20313140 (25 bp)
AAAAACTTCTTGCAGTGACCGTCGC
NONE
Os.49908.1.S1_at--668--8932Chr11:20313131..20313155 (25 bp)
TGACCGTCGCCGTGATCATCAACAA
NONE
Os.49908.1.S1_at--1124--3091Chr11:22874658..22874682 (25 bp)
AATTAGCAAATTCACCGGGTTCTTG
LOC_Os11g39260
Os.49908.1.S1_at--591--5092Chr11:20313210..20313234 (25 bp)
GCACGCCACAAATCTGCAAGCCAGA
NONE
Os.49908.1.S1_at--1048--5151Chr11:22874599..22874623 (25 bp)
GCAAGCCAGAAGTTCTCACCGGAAT
LOC_Os11g39260
Os.49908.1.S1_at--700--1772Chr11:20313243..20313266 (24 bp)
ACCGGAATCCACTTCGTCAATCAAA
NONE
Os.49908.1.S1_at--828--2932Chr11:20313267..20313291 (25 bp)
AAGGCACCCAGGAATTGTTCTTGCT
NONE
Os.49908.1.S1_at--1077--6732Chr11:20313283..20313307 (25 bp)
GTTCTTGCTGGAATCACTATGGCAT
NONE
Os.49908.1.S1_at--137--7992Chr11:20313429..20313453 (25 bp)
GGATGAAGTCCGTACATGCAGAACA
NONE
Os.49908.1.S1_at--133--851Chr11:22874354..22874378 (25 bp)
ATGGACTGGCACATCCTATCTAAGT
LOC_Os11g39260
Os.49908.1.S1_at--981--2572Chr11:20313469..20313493 (25 bp)
AACGGACTGGCACATCCTATCTAAG
NONE
Target Sequence 
AAAAACTTCTTGCAGTGACCGTCGCCGTGATCATCAACAAGCACGCCACAAATTAGCAAATTCACCGGGTTCTTGCCGTT
CAAACTTCTCGCCAGCACGCCACAAATCTGCAAGCCAGAAGTTCTCACCGGAATCCACTTCGTCAATCAAAAAGGCACCC
AGGAATTGTTCTTGCTGGAATCACTATGGCATACAAGAAGATTAGTGAGTTGACAACAAAAGGTCAAACATGGAGAATCA
AAGCGATATTGAGAATGTAGGAATCGGTAAATTTTGCAACAGATGAGATTATGAGTTTTGATATGCTATTAATGGATGAA
GTCCGTACATGCAGAACAAGGTCCGCGAAATAAAATGGACTGGCACATCCTATCTAAGTCCAACAGGATTAGATTAAGCC
GACATTCCAGAAATGCAAAAATCATTAAAAAAATAAAAAAAAGAAAAACGGACTGGCACATCCTATCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis