Browse Element(s) Details


Os.7513.1.S1_at

Description gb:CB680661
DB_XREF= gi:29684386
DB_XREF=OSJNEf05M15.r
CLONE=OSJNEf05M15
TID=Os.7513.1
CNT=54
FEA=EST
TIER=Stack
STK=11
UG=Os.7513 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_201316.1 (A.thaliana) AAC13497.1) (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3922011/11Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39190Os.52240.1.S1_at11/1111+22832391..22836099NB-ARC domain containing protein, expressed
LOC_Os11g39200OsAffx.31381.1.S1_at11/1111+22840926..22843324hAT family dimerisation domain containing protein
LOC_Os11g39200Os.57369.1.S1_at2/1111+22840926..22843324hAT family dimerisation domain containing protein
LOC_Os11g39210OsAffx.6388.1.S1_at4/1111+22845476..22847913hypothetical protein
LOC_Os11g39210OsAffx.6388.1.S1_x_at3/1111+22845476..22847913hypothetical protein
LOC_Os11g39220Os.7513.1.S1_at11/1111+22852827..22856982Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
LOC_Os11g39220Os.50057.1.S1_at1/1111+22852827..22856982Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
LOC_Os11g39230OsAffx.7352.1.S1_at11/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.2.S1_x_at9/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.3.S1_x_at8/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.5.S1_x_at6/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.4.S1_x_at1/1111+22859810..22864593hypothetical protein
LOC_Os11g39240NANA11+22865855..22866779hypothetical protein
LOC_Os11g39250Os.27343.1.A1_at11/1111+22867253..22874086transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g39260Os.49908.1.S1_at11/1111+22874214..22877337RGH2A, putative
LOC_Os11g39270NANA11+22878808..22884814retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0001676biological_processlong-chain fatty acid metabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0005777cellular_componentperoxisome
GO:0003997molecular_functionacyl-CoA oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7513.1.S1_at--556--2071Chr11:22853647..22853671 (25 bp)
ACATTGAGTCTGTCATTCTTGCGAA
LOC_Os11g39220
Os.7513.1.S1_at--383--2671Chr11:22853484..22853638 (25 bp)
AAGCGGTCAAAAGATGCCCGGATGA
LOC_Os11g39220
Os.7513.1.S1_at--648--3671Chr11:22853425..22853449 (25 bp)
CTTTACGCGCTTGATAGGATCTGGA
LOC_Os11g39220
Os.7513.1.S1_at--193--8211Chr11:22853382..22853406 (25 bp)
GGAATGTGGACTATGTTGCCCCAAA
LOC_Os11g39220
Os.7513.1.S1_at--869--2011Chr11:22853243..22853267 (25 bp)
ACTAGCTGACTACCTCAGTTACCAA
LOC_Os11g39220
Os.7513.1.S1_at--457--6431Chr11:22853182..22853206 (25 bp)
GATCTTCCAGATCTCATCATTCGTG
LOC_Os11g39220
Os.7513.1.S1_at--355--4531Chr11:22853158..22853182 (25 bp)
GCCCCAATCGGCATGCAGTCTGAGG
LOC_Os11g39220
Os.7513.1.S1_at--458--3751Chr11:22853127..22853151 (25 bp)
CTCAGTATACTCAGCATGTTGGTTT
LOC_Os11g39220
Os.7513.1.S1_at--83--2051Chr11:22853083..22853107 (25 bp)
ACTTATTATACTTTCCAATGGCCAA
LOC_Os11g39220
Os.7513.1.S1_at--1160--10011Chr11:22852962..22852986 (25 bp)
TAGACTGTGGTCTCATTGTGAATAA
LOC_Os11g39220
Os.7513.1.S1_at--83--6811Chr11:22852937..22852961 (25 bp)
GTTTTGTCATACTTTACTTTGGCAT
LOC_Os11g39220
Target Sequence 
ACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGATGCCCGGATGAAAAAACACGGGAATTGTTGAAA
TTGGTGTGCGACCTTTACGCGCTTGATAGGATCTGGAAAGATATAGGAACCTATCGGAATGTGGACTATGTTGCCCCAAA
NAAAGCCAAGGCTATCCATAAACTAGCTGACTACCTCAGTTACCAAGTGAGGCTTGTNGCTCAGGAACTCGTCGANNGCA
TTTGATCTTCCAGATCTCATCATTCGTGCCCCAATCGGCATGCAGTCTGAGGCATATGCTCAGTATACTCAGCATGTTGG
TTTTTAAGTTTTAACAATATATACTTATTATACTTTCCAATGGCCAAATATATATAGCTAAACTTTATGTTATAGCAAAT
GACATCAAGTCNNNATGAAATATACGAGTGTAGTGAATAATAGATGGTAAAATAATGTATTTTTAGACTGTGGTCTCATT
GTGAATAAGTTTTGTCATACTTTACTTTGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis