Browse Element(s) Details


OsAffx.31381.1.S1_at

Description tigr:9639.m03571
TID=OsAffx.31381.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3920011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39170NANA11+22813491..22818491retrotransposon protein, putative, unclassified
LOC_Os11g39190Os.52240.1.S1_at11/1111+22832391..22836099NB-ARC domain containing protein, expressed
LOC_Os11g39200OsAffx.31381.1.S1_at11/1111+22840926..22843324hAT family dimerisation domain containing protein
LOC_Os11g39200Os.57369.1.S1_at2/1111+22840926..22843324hAT family dimerisation domain containing protein
LOC_Os11g39210OsAffx.6388.1.S1_at4/1111+22845476..22847913hypothetical protein
LOC_Os11g39210OsAffx.6388.1.S1_x_at3/1111+22845476..22847913hypothetical protein
LOC_Os11g39220Os.7513.1.S1_at11/1111+22852827..22856982Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
LOC_Os11g39220Os.50057.1.S1_at1/1111+22852827..22856982Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
LOC_Os11g39230OsAffx.7352.1.S1_at11/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.2.S1_x_at9/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.3.S1_x_at8/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.5.S1_x_at6/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.4.S1_x_at1/1111+22859810..22864593hypothetical protein
LOC_Os11g39240NANA11+22865855..22866779hypothetical protein
LOC_Os11g39250Os.27343.1.A1_at11/1111+22867253..22874086transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31381.1.S1_at--1121--4312Chr11:4249031..4249055 (25 bp)
CCATTGGTATATCGCTTAATTGAAT
NONE
OsAffx.31381.1.S1_at--1120--8991Chr11:22841247..22841271 (25 bp)
TGAATTAGCCTTGATTTTGCCCGTT
LOC_Os11g39200
OsAffx.31381.1.S1_at--291--8831Chr11:22841236..22841260 (25 bp)
TGATTTTGCCCGTTGCAACGGCAAC
LOC_Os11g39200
OsAffx.31381.1.S1_at--359--5151Chr11:22841216..22841240 (25 bp)
GCAACAGTGGAAAGAGCCTTCTCAG
LOC_Os11g39200
OsAffx.31381.1.S1_at--326--5871Chr11:22841203..22841227 (25 bp)
GAGCCTTCTCAGCTATGAATGTTAT
LOC_Os11g39200
OsAffx.31381.1.S1_at--758--6731Chr11:22841183..22841207 (25 bp)
GTTATTAAAACTGAGCTGCGGAACA
LOC_Os11g39200
OsAffx.31381.1.S1_at--403--7991Chr11:22841143..22841167 (25 bp)
GGATGAATCACTGCATGATTTGCTA
LOC_Os11g39200
OsAffx.31381.1.S1_at--635--3511Chr11:22841130..22841154 (25 bp)
CATGATTTGCTATATTGAGCGGGAT
LOC_Os11g39200
OsAffx.31381.1.S1_at--412--5893Chr02:7289490..7289514 (25 bp)
GAGCGGGATGTTTTTACTAGCATTG
NONE
OsAffx.31381.1.S1_at--360--152Chr02:7289536..7289560 (25 bp)
ATTATCATGCTTTGAGGACGCGCAA
NONE
OsAffx.31381.1.S1_at--771--5792Chr11:22841052..22841076 (25 bp)
GACGCGCAAGCACAAATTACCTAGA
LOC_Os11g39200
Target Sequence 
CCATTGGTATATCGCTTAATTGAATTAGCCTTGATTTTGCCCGTTGCAACGGCAACAGTGGAAAGAGCCTTCTCAGCTAT
GAATGTTATTAAAACTGAGCTGCGGAACAAGATGAATGATGAATGGATGAATCACTGCATGATTTGCTATATTGAGCGGG
ATGTTTTTACTAGCATTGAAGATCATCAGATTATAGAACATTATCATGCTTTGAGGACGCGCAAGCACAAATTACCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis