Browse Element(s) Details


OsAffx.7352.1.S1_at

Description tigr:9639.m03576
TID=OsAffx.7352.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3923011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39190Os.52240.1.S1_at11/1111+22832391..22836099NB-ARC domain containing protein, expressed
LOC_Os11g39200OsAffx.31381.1.S1_at11/1111+22840926..22843324hAT family dimerisation domain containing protein
LOC_Os11g39200Os.57369.1.S1_at2/1111+22840926..22843324hAT family dimerisation domain containing protein
LOC_Os11g39210OsAffx.6388.1.S1_at4/1111+22845476..22847913hypothetical protein
LOC_Os11g39210OsAffx.6388.1.S1_x_at3/1111+22845476..22847913hypothetical protein
LOC_Os11g39220Os.7513.1.S1_at11/1111+22852827..22856982Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
LOC_Os11g39220Os.50057.1.S1_at1/1111+22852827..22856982Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
LOC_Os11g39230OsAffx.7352.1.S1_at11/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.2.S1_x_at9/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.3.S1_x_at8/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.5.S1_x_at6/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.4.S1_x_at1/1111+22859810..22864593hypothetical protein
LOC_Os11g39240NANA11+22865855..22866779hypothetical protein
LOC_Os11g39250Os.27343.1.A1_at11/1111+22867253..22874086transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g39260Os.49908.1.S1_at11/1111+22874214..22877337RGH2A, putative
LOC_Os11g39270NANA11+22878808..22884814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g39280Os.56221.1.S1_at11/1111+22888587..22890384expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7352.1.S1_at--834--6291Chr11:22860370..22860394 (25 bp)
GATGATGGTTTCACCGGATTTCTTA
LOC_Os11g39230
OsAffx.7352.1.S1_at--606--7931Chr11:22860338..22860362 (25 bp)
GGATTCTCTATCCACTCCAAAATAC
LOC_Os11g39230
OsAffx.7352.1.S1_at--363--2451Chr11:22860320..22860344 (25 bp)
AAAATACATCCACACACTCGAGCTT
LOC_Os11g39230
OsAffx.7352.1.S1_at--860--5911Chr11:22860301..22860325 (25 bp)
GAGCTTTCAGGCGAACTACCCAGAG
LOC_Os11g39230
OsAffx.7352.1.S1_at--1042--4631Chr11:22860163..22860187 (25 bp)
GCGTTTTCGGTCAGTGCAGCAAGCC
LOC_Os11g39230
OsAffx.7352.1.S1_at--379--3251Chr11:22860144..22860168 (25 bp)
CAAGCCAGGACCACGGTGTCATGGA
LOC_Os11g39230
OsAffx.7352.1.S1_at--614--9791Chr11:22860012..22860036 (25 bp)
TAAGCTTCCTTGATGGCGCGATGCC
LOC_Os11g39230
OsAffx.7352.1.S1_at--500--7471Chr11:22859937..22859961 (25 bp)
GTGTGGAAAACCTAGCTAGCCTCCA
LOC_Os11g39230
OsAffx.7352.1.S1_at--716--9991Chr11:22859921..22859945 (25 bp)
TAGCCTCCAGCAGGTGCTTCTTAGA
LOC_Os11g39230
OsAffx.7352.1.S1_at--586--10451Chr11:22859901..22859925 (25 bp)
TTAGAGTTAGCCAGCAAGCTCCTGA
LOC_Os11g39230
OsAffx.7352.1.S1_at--676--1451Chr11:22859848..22859872 (25 bp)
AGAAGTTCAGTCAGCTTGCATCCCA
LOC_Os11g39230
Target Sequence 
GATGATGGTTTCACCGGATTTCTTAATCTGATGGATTCTCTATCCACTCCAAAATACATCCACACACTCGAGCTTTCAGG
CGAACTACCCAGAGTGCCTAAATGGATCAGTGAGCTACAAAACCTGGAGAAATTGACTTTATCATTGACATCACTGAGCA
CAGATGCTTTGTTTATCATTGCCCAACTTCCCGTGCTCTTCTCCCTTGCGTTTTCGGTCAGTGCAGCAAGCCAGGACCAC
GGTGTCATGGAGATCCTGACGAAGAACACGATGAATTCAGGGGGGAAAATCCTCATCCCTTCTGACGGATTTCACAGCCT
CCAGCTGCTCCGTTTCTCGGCACCGTTACTGCCACTGCTAAGCTTCCTTGATGGCGCGATGCCGAAGCTACAGAGGCTGG
AGCTGCGGTTTAGGATCTTGGAAGGTGCTCATGGTGTGGAAAACCTAGCTAGCCTCCAGCAGGTGCTTCTTAGAGTTAGC
CAGCAAGCTCCTGAAACTACCAAGGTGCAGGTGTCTGATATCAGAAGTTCAGTCAGCTTGCATCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis