Browse Element(s) Details


Os.52549.1.S1_s_at

Description gb:AK067887.1
DB_XREF= gi:32977905
TID=Os.52549.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013125D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013125D22, full insert sequence.
FL= gb:AK067887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1024011/11F-box domain containing protein, expressed
LOC_Os11g102501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10200Os.54051.1.S1_at10/1111+5525545..5529655F-box domain containing protein, expressed
LOC_Os11g10210NANA11+5536014..5536490hypothetical protein
LOC_Os11g10220NANA11+5542304..5543858retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10230Os.2987.3.S1_x_at1/1111+5545600..5548415retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g10240Os.52549.1.S1_s_at11/1111+5552766..5555631F-box domain containing protein, expressed
LOC_Os11g10240Os.52549.1.S1_at9/1111+5552766..5555631F-box domain containing protein, expressed
LOC_Os11g10250Os.54679.1.S1_at11/1111+5558304..5563759expressed protein
LOC_Os11g10250OsAffx.18779.1.S1_at10/1111+5558304..5563759expressed protein
LOC_Os11g10250Os.52549.1.S1_s_at1/1111+5558304..5563759expressed protein
LOC_Os11g10260NANA11+5564981..5572514retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10270NANA11+5573437..5574183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10280Os.2436.1.S1_at4/1111+5575562..5578033D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52549.1.S1_s_at--781--3131Chr11:5553821..5553845 (25 bp)
AATTACAGTGCATTGGTGAAACCAG
LOC_Os11g10240
Os.52549.1.S1_s_at--925--7751Chr11:5553807..5553831 (25 bp)
GGTGAAACCAGCTGCAATATCCAAA
LOC_Os11g10240
Os.52549.1.S1_s_at--183--5551Chr11:5553731..5553755 (25 bp)
GAAACTGTGAAGTTCTTGAGTACAT
LOC_Os11g10240
Os.52549.1.S1_s_at--468--3211Chr11:5553085..5553109 (25 bp)
CAAGTCATGATGAAGGATCCTCTAG
LOC_Os11g10240
Os.52549.1.S1_s_at--627--6351Chr11:5553070..5553094 (25 bp)
GATCCTCTAGATGAAGTACCTGTTG
LOC_Os11g10240
Os.52549.1.S1_s_at--916--1431Chr11:5553008..5553032 (25 bp)
AGAACTCTGCCTTTTGTCAATGAGA
LOC_Os11g10240
Os.52549.1.S1_s_at--966--9751Chr11:5552946..5552970 (25 bp)
TAATGAGTTGTTTAGACCGTCTAGC
LOC_Os11g10240
Os.52549.1.S1_s_at--813--5812Chr11:5552932..5552956 (25 bp)
GACCGTCTAGCTGTTGGAGCTGGTT
LOC_Os11g10240
Os.52549.1.S1_s_at--176--8091Chr11:5552917..5552941 (25 bp)
GGAGCTGGTTATTTTTCTTGAATTA
LOC_Os11g10240
Os.52549.1.S1_s_at--314--10151Chr11:5552894..5552918 (25 bp)
TATCCTTTTATAAGACTGTCTCGAC
LOC_Os11g10240
Os.52549.1.S1_s_at--577--5731Chr11:5552881..5552905 (25 bp)
GACTGTCTCGACTGCTTAATTAGCT
LOC_Os11g10240
Target Sequence 
AATTACAGTGCATTGGTGAAACCAGCTGCAATATCCAAACATCTTAAGGTAGTGAAAGTCCACTGTAAAGAAGTTGATGA
AGGGGTCTGTGAAACTGTGAAGTTCTTGAGTACATTGGATGTAGTGGTTCTTATCAGAAGGATGGATCGGTCGACAAATC
GTTGAATCACCCATCCGCCCCTCGTAACATTTATTGTACTCTACGTGTTGTTGCAGTCTTCAGTTTCGAGGAAGGAAATT
CGAGTTCAAGTCATGATGAAGGATCCTCTAGATGAAGTACCTGTTGAATATTCAGGAATGCAAGGCTTAAACTTGCAGTG
ACAAGAACTCTGCCTTTTGTCAATGAGATTCATATTAAGTTCCACTAGTAGGAAGAACTGGGATATAATGAGTTGTTTAG
ACCGTCTAGCTGTTGGAGCTGGTTATTTTTCTTGAATTATCCTTTTATAAGACTGTCTCGACTGCTTAATTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52549.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis