Browse Element(s) Details


Os.52593.1.S1_s_at

Description gb:AK068230.1
DB_XREF= gi:32978248
TID=Os.52593.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013147J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147J22, full insert sequence.
FL= gb:AK068230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2123011/11acyl-activating enzyme 17, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21200NANA9+12789271..12791761hypothetical protein
LOC_Os09g21210Os.6405.1.S1_at11/119+12801545..12804260beta-glucan binding protein, putative, expressed
LOC_Os09g21210Os.6405.1.S2_at11/119+12801545..12804260beta-glucan binding protein, putative, expressed
LOC_Os09g21220OsAffx.4929.1.S1_at1/119+12808266..12809010hypothetical protein
LOC_Os09g21230Os.52593.1.S1_s_at11/119+12816241..12820673acyl-activating enzyme 17, putative, expressed
LOC_Os09g21230Os.38408.1.S1_a_at11/119+12816241..12820673acyl-activating enzyme 17, putative, expressed
LOC_Os09g21240NANA9+12822760..12823020hypothetical protein
LOC_Os09g21250Os.50756.1.S1_at10/119+12824718..12827073expressed protein
LOC_Os09g21260OsAffx.29959.1.S1_at11/119+12830414..12831877Cytochrome P450 family protein, expressed
LOC_Os09g21270OsAffx.17822.1.S1_at11/119+12832198..12833402hypothetical protein
LOC_Os09g21280NANA9+12834965..12837614hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016874molecular_functionligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52593.1.S1_s_at--257--7751Chr09:12819009..12819033 (25 bp)
GGTGACTATGCTTGGGTTGGTACCC
LOC_Os09g21230
Os.52593.1.S1_s_at--833--7671Chr09:12819022..12819046 (25 bp)
GGGTTGGTACCCAGCATTGCTCGTT
LOC_Os09g21230
Os.52593.1.S1_s_at--903--4171Chr09:12819031..12819055 (25 bp)
CCCAGCATTGCTCGTTCATGGAAAA
LOC_Os09g21230
Os.52593.1.S1_s_at--1080--7011Chr09:12819056..12819080 (25 bp)
GTACAGATTGTACAGCTGGGTTTGA
LOC_Os09g21230
Os.52593.1.S1_s_at--102--4731Chr09:12819070..12819094 (25 bp)
GCTGGGTTTGATTGGTCAACCATTA
LOC_Os09g21230
Os.52593.1.S1_s_at--350--3591Chr09:12819210..12819231 (22 bp)
CATTAGATGTTTTAGCTCATCCGGG
LOC_Os09g21230
Os.52593.1.S1_s_at--806--6851Chr09:12819274..12819298 (25 bp)
GTTTGCTACAAACCAGTTATAGAGT
LOC_Os09g21230
Os.52593.1.S1_s_at--1033--7931Chr09:12819325..12819349 (25 bp)
GGATTTGTTGCTGGATCATTGCTGC
LOC_Os09g21230
Os.52593.1.S1_s_at--87--7971Chr09:12819337..12819361 (25 bp)
GGATCATTGCTGCAACCTCAAGCAT
LOC_Os09g21230
Os.52593.1.S1_s_at--323--1551Chr09:12819357..12819381 (25 bp)
AGCATTATCTGCATTCAGTACACCT
LOC_Os09g21230
Os.52593.1.S1_s_at--927--3031Chr09:12819421..12819546 (25 bp)
AATCCATTACCACAAGATTCTGTTG
LOC_Os09g21230
Target Sequence 
GGTGACTATGCTTGGGTTGGTACCCAGCATTGCTCGTTCATGGAAAAGTACAGATTGTACAGCTGGGTTTGATTGGTCAA
CCATTAGATGTTTTAGCTCATCCGGGGAGGCATCCAGTGTGGATGATTATTTATGGTTGATGGGAAGAGTTTGCTACAAA
CCAGTTATAGAGTACTGTGGAGGCACAGAAATTGGTGGTGGATTTGTTGCTGGATCATTGCTGCAACCTCAAGCATTATC
TGCATTCAGTACACCTGCAATGGGTTGTAACCTGTTTATTCTTGACAACAATGGAAATCCATTACCACAAGATTCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52593.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis