Browse Element(s) Details


Os.52620.1.S1_at

Description gb:AK068349.1
DB_XREF= gi:32978367
TID=Os.52620.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136B15, full insert sequence.
FL= gb:AK068349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1378011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13760Os.1233.1.S1_at11/111+7709161..7714533DnaJ domain containing protein, expressed
LOC_Os01g13770Os.19777.1.A1_at11/111+7714993..7719253Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os01g13780Os.52620.1.S1_at11/111+7721116..7722334expressed protein
LOC_Os01g13800Os.17143.1.S1_at11/111+7735876..7739680Receptor-like protein kinase 5 precursor, putative, expressed
LOC_Os01g13810OsAffx.25616.2.S1_x_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.3.S1_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.5.S1_x_at10/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.2.S1_at8/111+7741045..7744548expressed protein
LOC_Os01g13820NANA1+7746206..7751216retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52620.1.S1_at--187--6171Chr01:7721768..7721792 (25 bp)
GAGGATCCAGCGTCTTGAGATGCAT
LOC_Os01g13780
Os.52620.1.S1_at--770--10771Chr01:7721782..7721806 (25 bp)
TTGAGATGCATCACGCCTCGGCGTG
LOC_Os01g13780
Os.52620.1.S1_at--656--9451Chr01:7721799..7721823 (25 bp)
TCGGCGTGCAAGATCGGTCACAGCA
LOC_Os01g13780
Os.52620.1.S1_at--260--9792Chr01:7722096..7722120 (25 bp)
TAAGAGAGAGGAGACTGACCTGGAC
LOC_Os01g13780
Os.52620.1.S1_at--494--5651Chr01:7722126..7722150 (25 bp)
GACATGTAGGACCACGTGGTTCCCA
LOC_Os01g13780
Os.52620.1.S1_at--852--3351Chr01:7722162..7722186 (25 bp)
CAGCCACGTATGACAAACCCGGGAT
LOC_Os01g13780
Os.52620.1.S1_at--335--2611Chr01:7722177..7722201 (25 bp)
AACCCGGGATCAAAACCATCAAATG
LOC_Os01g13780
Os.52620.1.S1_at--532--3291Chr01:7722196..7722220 (25 bp)
CAAATGATCTAGTGTGACCGGTTTT
LOC_Os01g13780
Os.52620.1.S1_at--1081--5811Chr01:7722211..7722235 (25 bp)
GACCGGTTTTGATTAGTCAATGGAC
LOC_Os01g13780
Os.52620.1.S1_at--499--2971Chr01:7722229..7722253 (25 bp)
AATGGACGCGAGATATTTACAGTTT
LOC_Os01g13780
Os.52620.1.S1_at--676--10271Chr01:7722304..7722328 (25 bp)
TTTCCGGCCGAATATAATCTGTTTA
LOC_Os01g13780
Target Sequence 
GAGGATCCAGCGTCTTGAGATGCATCACGCCTCGGCGTGCAAGATCGGTCACAGCAAGAAGCAGCTCAGCGATGGGTGAA
CGACGTCGTGCTCACCCTGCACAGCCGCTACCTGCGCTGCGTCGACTTGTACAACGACATACGCCTCATCGACACCAACA
ACCTGCGAAGCTTCAGCTACATCCCGCTGCCGGAGGAGGCAATGACGCACGACCGCCACATCGATGAAGACAAGCCCGAT
CCGGCTCGCCGTGTCTCCATCACCAGCGCAGGCTCGATAAATCTTGTTTGCATAGACAACGTCATCGTACGCAGCGAGAT
AAGAAGGGTAAGAGAGAGGAGACTGACCTGGACATGTTGACATGTAGGACCACGTGGTTCCCACGCTGACTCAGCAGCCA
CGTATGACAAACCCGGGATCAAAACCATCAAATGATCTAGTGTGACCGGTTTTGATTAGTCAATGGACGCGAGATATTTA
CAGTTTGAGGATGATGTTGTAACTGGATGATAAGTTGAGGGACTTTCGGTGTACTTTTTCCGGCCGAATATAATCTGTTT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis