Browse Element(s) Details


Os.5271.1.S1_at

Description gb:AK064021.1
DB_XREF= gi:32974039
TID=Os.5271.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-A03, full insert sequence.
FL= gb:AK102846.1 gb:AK064021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1053011/11Amidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10490OsAffx.13754.1.S1_at11/114+5684894..5685166hypothetical protein
LOC_Os04g10500OsAffx.3764.1.S1_at11/114+5686035..5687404hypothetical protein
LOC_Os04g10514NANA4+5707627..5707824NA
LOC_Os04g10530Os.5271.1.S1_at11/114+5708108..5711954Amidase family protein, expressed
LOC_Os04g10539NANA4+5712316..5712565NA
LOC_Os04g10550NANA4+5716762..5717070hypothetical protein
LOC_Os04g10569NANA4+5719447..5721100amidase family protein, putative
LOC_Os04g10590NANA4+5722651..5724758retrotransposon, putative, centromere-specific
LOC_Os04g10600NANA4+5736840..5737397hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0004040molecular_functionamidase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5271.1.S1_at--199--2291Chr04:5711439..5711463 (25 bp)
AAAGACCAACGGCATTGGACCGGTG
LOC_Os04g10530
Os.5271.1.S1_at--964--1551Chr04:5711469..5711493 (25 bp)
AGCTTCAATCCAACATCTCAATAAG
LOC_Os04g10530
Os.5271.1.S1_at--921--3731Chr04:5711485..5711509 (25 bp)
CTCAATAAGCTGTCTGCTGATGGGC
LOC_Os04g10530
Os.5271.1.S1_at--410--6351Chr04:5711539..5711563 (25 bp)
GATGCGATTGTCACGCCCAATGACA
LOC_Os04g10530
Os.5271.1.S1_at--164--2811Chr04:5711557..5711581 (25 bp)
AATGACAACGGGAGAGTCTTCTTCG
LOC_Os04g10530
Os.5271.1.S1_at--797--9631Chr04:5711585..5711609 (25 bp)
TCAGTGGCATGCCAGCGATCACCGT
LOC_Os04g10530
Os.5271.1.S1_at--41--1131Chr04:5711634..5711658 (25 bp)
AGTGCCATTTGGTACTTGCTTCGGT
LOC_Os04g10530
Os.5271.1.S1_at--818--2311Chr04:5711719..5711743 (25 bp)
AAAGTTCGAATGATGCCTGGCTTCA
LOC_Os04g10530
Os.5271.1.S1_at--805--6352Chr04:5711730..5711754 (25 bp)
GATGCCTGGCTTCAAGATGTAGTGT
LOC_Os04g10530
Os.5271.1.S1_at--547--6791Chr04:5711768..5711792 (25 bp)
GTTATATAATTCACGGAGCTTTTTG
LOC_Os04g10530
Os.5271.1.S1_at--713--5911Chr04:5711783..5711807 (25 bp)
GAGCTTTTTGATCCTTGCCCAAATA
LOC_Os04g10530
Target Sequence 
AAAGACCAACGGCATTGGACCGGTGGAGAAAGCTTCAATCCAACATCTCAATAAGCTGTCTGCTGATGGGCTGGAGAAGT
TGATGAGGATGCACCAGTTGGATGCGATTGTCACGCCCAATGACAACGGGAGAGTCTTCTTCGCCGTCAGTGGCATGCCA
GCGATCACCGTGCCGGCTGGGTACGACAGTCAAGGAGTGCCATTTGGTACTTGCTTCGGTGGATTGAAGGGCTATGAGCC
AAGGCTGATTGAAATGGCCTATGCTTATGAGCAAGCTACCAAAGTTCGAATGATGCCTGGCTTCAAGATGTAGTGTATAT
AAAATTTGTGTTATATAATTCACGGAGCTTTTTGATCCTTGCCCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis