Browse Element(s) Details


Os.52715.1.S1_at

Description gb:AK068895.1
DB_XREF= gi:32978920
TID=Os.52715.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169E20, full insert sequence.
FL= gb:AK068895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1781011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17770Os.52916.1.A1_at11/119+10871550..10876952expressed protein
LOC_Os09g17780NANA9+10879282..10880268retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17790OsAffx.29900.1.S1_at10/119+10882558..10883604hypothetical protein
LOC_Os09g17800NANA9+10884616..10889039retrotransposon protein, putative, unclassified
LOC_Os09g17810Os.52715.1.S1_at11/119+10897051..10899226expressed protein
LOC_Os09g17820OsAffx.29901.1.S1_at11/119+10899665..10900382hypothetical protein
LOC_Os09g17830Os.8657.1.S1_at11/119+10904712..10908704Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.8657.1.S1_at11/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.47940.1.S1_at2/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.37995.1.S1_at1/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17850Os.27991.1.S1_at11/119+10921465..10925975histone acetyl transferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52715.1.S1_at--413--1411Chr09:10898636..10898660 (25 bp)
AGAAAACCTACAGACCTGCTTTCGG
LOC_Os09g17810
Os.52715.1.S1_at--735--4911Chr09:10898660..10898684 (25 bp)
GCTTCCGAAGATACCTGTCTCTTGA
LOC_Os09g17810
Os.52715.1.S1_at--266--1391Chr09:10898742..10898766 (25 bp)
AGACCCTAAGCTTCGGCAGAGATTA
LOC_Os09g17810
Os.52715.1.S1_at--758--8251Chr09:10898756..10898780 (25 bp)
GGCAGAGATTACGTCAAGCCATCAT
LOC_Os09g17810
Os.52715.1.S1_at--877--9731Chr09:10898945..10898969 (25 bp)
TAATTAGCACTCACCGTTTTGTCAC
LOC_Os09g17810
Os.52715.1.S1_at--341--7871Chr09:10898986..10899010 (25 bp)
GGTTTGAAGGTTTGTGCTCCGGCCA
LOC_Os09g17810
Os.52715.1.S1_at--1068--7471Chr09:10899020..10899044 (25 bp)
GTGTGGTTTGTCTTCTTTGGACTTT
LOC_Os09g17810
Os.52715.1.S1_at--400--6891Chr09:10899061..10899085 (25 bp)
GTATAATTCACCAAGTTCCTGCAAA
LOC_Os09g17810
Os.52715.1.S1_at--998--2051Chr09:10899091..10899115 (25 bp)
ACTTGGTTAGTCTTGCCTTATTCGC
LOC_Os09g17810
Os.52715.1.S1_at--294--10351Chr09:10899108..10899132 (25 bp)
TTATTCGCCGGAGACCTTACTTAGT
LOC_Os09g17810
Os.52715.1.S1_at--1139--3651Chr09:10899123..10899147 (25 bp)
CTTACTTAGTCTTGCCTGCTTGTGA
LOC_Os09g17810
Target Sequence 
AGAAAACCTACAGACCTGCTTTCGGCTTCCGAAGATACCTGTCTCTTGAAAATTTTGAGATAGAATTCAGAAAAACCTAC
GCGAAGCACAAGTTTTTCAAGGTTCCAGACCCTAAGCTTCGGCAGAGATTACGTCAAGCCATCATCCAGAAAATCATTCC
GCATTATAGCATGTATCTGGAGGAGCGAGCAGCAAGGGGAATGCACAATCGACCTCCCAAAATTACTCCTGAGCAGTTGA
AGGAGCTATTAGAAGAATTATTCGAAGGTTGAAGCAGATGAATTTCAGTGGAATAAATGGCTATATATTTAATTAGCACT
CACCGTTTTGTCACCCTAGCTTGGGTCGTAGGTTTGAAGGTTTGTGCTCCGGCCAGCAATTAAGGTGTGGTTTGTCTTCT
TTGGACTTTGGTGATTATGGTGAGAGTATAATTCACCAAGTTCCTGCAAACAGAAACTTGGTTAGTCTTGCCTTATTCGC
CGGAGACCTTACTTAGTCTTGCCTGCTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis