Browse Element(s) Details


OsAffx.29901.1.S1_at

Description tigr:9637.m01525
TID=OsAffx.29901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1782011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17770Os.52916.1.A1_at11/119+10871550..10876952expressed protein
LOC_Os09g17780NANA9+10879282..10880268retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17790OsAffx.29900.1.S1_at10/119+10882558..10883604hypothetical protein
LOC_Os09g17800NANA9+10884616..10889039retrotransposon protein, putative, unclassified
LOC_Os09g17810Os.52715.1.S1_at11/119+10897051..10899226expressed protein
LOC_Os09g17820OsAffx.29901.1.S1_at11/119+10899665..10900382hypothetical protein
LOC_Os09g17830Os.8657.1.S1_at11/119+10904712..10908704Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.8657.1.S1_at11/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.47940.1.S1_at2/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.37995.1.S1_at1/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17850Os.27991.1.S1_at11/119+10921465..10925975histone acetyl transferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29901.1.S1_at--889--9751Chr09:10900324..10900348 (25 bp)
TAATGCGACCTATCGGTTCCATTTG
LOC_Os09g17820
OsAffx.29901.1.S1_at--578--8291Chr09:10900029..10900053 (25 bp)
GGCTAGATGAATGCGACCACGTCGT
LOC_Os09g17820
OsAffx.29901.1.S1_at--552--2591Chr09:10899960..10899984 (25 bp)
AACCCTTCATTCTGAGCCTTAACAA
LOC_Os09g17820
OsAffx.29901.1.S1_at--598--5911Chr09:10899930..10899954 (25 bp)
GAGCTCAGGGAGTCTATCACCAAGA
LOC_Os09g17820
OsAffx.29901.1.S1_at--1141--9731Chr09:10899887..10899911 (25 bp)
TAATTGGGTCATCTCGCCGAATGCC
LOC_Os09g17820
OsAffx.29901.1.S1_at--28--3031Chr09:10899868..10899892 (25 bp)
AATGCCGCGGCGATGAACTACACCA
LOC_Os09g17820
OsAffx.29901.1.S1_at--164--4271Chr09:10899839..10899863 (25 bp)
CCGGCATGCCATTCAGAAGGATCTT
LOC_Os09g17820
OsAffx.29901.1.S1_at--812--3031Chr09:10899787..10899811 (25 bp)
AATCCAGGAGTTCCAACGTTGTCCA
LOC_Os09g17820
OsAffx.29901.1.S1_at--194--2591Chr09:10899773..10899797 (25 bp)
AACGTTGTCCAAAGCCCTTGTGCTC
LOC_Os09g17820
OsAffx.29901.1.S1_at--851--10811Chr09:10899756..10899780 (25 bp)
TTGTGCTCCAGGACTTCCAGGATGA
LOC_Os09g17820
OsAffx.29901.1.S1_at--115--2351Chr09:10899708..10899732 (25 bp)
AAAGCTTCGGCGATGTCCAACTTGA
LOC_Os09g17820
Target Sequence 
TAATGCGACCTATCGGTTCCATTTGCTCAGCCTTCCACGTCGGTAGCCGGCTAGATGAATGCGACCACGTCGTCAACGTA
GAAAGACACCCGGTGAGGGACACTGAGAGGTTGAAGCAACCCTTCATTCTGAGCCTTAACAAAGAGGGAGCTCAGGGAGT
CTATCACCAAGATGAAAAACAAGGGGGATATAATTGGGTCATCTCGCCGAATGCCGCGGCGATGAACTACACCATCCCCC
GGCATGCCATTCAGAAGGATCTTCATGCTTGCCGTACGCAGAAGCATGGCAATCCAGGAGTTCCAACGTTGTCCAAAGCC
CTTGTGCTCCAGGACTTCCAGGATGATGAACTGCCAAGAGATGGAATCGAAAGCTTCGGCGATGTCCAACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis