Browse Element(s) Details


Os.52963.2.S1_at

Description gb:AK070154.1
DB_XREF= gi:32980178
TID=Os.52963.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023119K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043F21, full insert sequence.
FL= gb:AK070154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0882411/11Cytochrome P450 79A1, putative, expressed
LOC_Os04g094302/11Cytochrome P450 79A1, putative, expressed
LOC_Os04g088281/11Cytochrome P450 79A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08812NANA4+4826562..4827280hypothetical protein
LOC_Os04g08816OsAffx.32056.1.S1_x_at8/114+4829225..4833424transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08816OsAffx.32056.1.S1_at2/114+4829225..4833424transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08820OsAffx.29972.1.S1_x_at2/114+4839406..4839675hypothetical protein
LOC_Os04g08824Os.52963.2.S1_at11/114+4849939..4852158Cytochrome P450 79A1, putative, expressed
LOC_Os04g08824Os.52963.1.S1_at11/114+4849939..4852158Cytochrome P450 79A1, putative, expressed
LOC_Os04g08828Os.52963.2.S1_at1/114+4854392..4858328Cytochrome P450 79A1, putative, expressed
LOC_Os04g08832Os.45173.1.S1_x_at2/114+4861479..4867752retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006569biological_processtryptophan catabolism
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0010120biological_processcamalexin biosynthesis
GO:0019761biological_processglucosinolate biosynthesis
GO:0009507cellular_componentchloroplast
GO:0016709molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD or NADH as one donor, and incorporation of one atom of oxygen
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52963.2.S1_at--255--2612Chr04:4850909..4850933 (25 bp)
AACGCTGGTAATAAGCTCTATTACA
LOC_Os04g08824
Os.52963.2.S1_at--331--3091Chr04:4850918..4850942 (25 bp)
AATAAGCTCTATTACACCGTCATAT
LOC_Os04g08824
Os.52963.2.S1_at--249--1591Chr04:4850922..4850946 (25 bp)
AGCTCTATTACACCGTCATATATAT
LOC_Os04g08824
Os.52963.2.S1_at--330--5693Chr04:4850961..4850985 (25 bp)
GACTATAGATATGTCCTCGGAAGAA
LOC_Os04g08824
Os.52963.2.S1_at--308--7251Chr04:4850973..4850997 (25 bp)
GTCCTCGGAAGAAAAATAGTACGCT
LOC_Os04g08824
Os.52963.2.S1_at--809--2251Chr04:4850986..4851010 (25 bp)
AAATAGTACGCTTGAAGTGCTTACA
LOC_Os04g08824
Os.52963.2.S1_at--641--10731Chr04:4850997..4851021 (25 bp)
TTGAAGTGCTTACATTTTGGTCCAA
LOC_Os04g08824
Os.52963.2.S1_at--852--10372Chr06:17125200..17125456 (25 bp)
TTTTGGTCCAAATTTCTAATACTAG
NONE
Os.52963.2.S1_at--494--9731Chr04:4851056..4851080 (25 bp)
TAATTAGTGAGGTCTTGGTTTCGTT
LOC_Os04g08824
Os.52963.2.S1_at--10--7391Chr04:4851062..4851086 (25 bp)
GTGAGGTCTTGGTTTCGTTATAGGA
LOC_Os04g08824
Os.52963.2.S1_at--965--3051Chr04:4851090..4851114 (25 bp)
AATATACTATGGTGTGGTTCCGTTC
LOC_Os04g08824
Target Sequence 
AACGCTGGTAATAAGCTCTATTACACCGTCATATATATATATTTCAAACTAGGACTATAGATATGTCCTCGGAAGAAAAA
TAGTACGCTTGAAGTGCTTACATTTTGGTCCAAATTTCTAATACTAGAAATGCTTATATTTTACAATTAATTAGTGAGGT
CTTGGTTTCGTTATAGGAAACAATATACTATGGTGTGGTTCCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52963.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis