Browse Element(s) Details


Os.52995.1.S1_at

Description gb:AK070343.1
DB_XREF= gi:32980367
TID=Os.52995.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052E24, full insert sequence.
FL= gb:AK070343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3896011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38950Os.35780.1.S1_at11/115+22751806..22758825RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os05g38960Os.52995.1.S1_at11/115+22770675..22772303expressed protein
LOC_Os05g38969NANA5+22775014..22775695NA
LOC_Os05g38980Os.53380.1.S1_at11/115+22776978..22781871respiratory burst oxidase protein F, putative, expressed
LOC_Os05g38990Os.55717.1.S1_at11/115+22791057..22792632CCT motif family protein, expressed
LOC_Os05g39000Os.53410.1.S1_at11/115+22795522..22798595kinase interacting protein 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52995.1.S1_at--585--9991Chr05:22771045..22771069 (25 bp)
TAGCCACCCTGGCTTGTACATGACT
LOC_Os05g38960
Os.52995.1.S1_at--32--551Chr05:22771009..22771033 (25 bp)
ATCGCCACCGCAGATTTGCATCAAG
LOC_Os05g38960
Os.52995.1.S1_at--964--6571Chr05:22770985..22771009 (25 bp)
GATTCGGACATATACAACTCAGGTG
LOC_Os05g38960
Os.52995.1.S1_at--84--331Chr05:22770934..22770958 (25 bp)
ATACAGCACGCATCACGGAAACGAT
LOC_Os05g38960
Os.52995.1.S1_at--66--2431Chr05:22770883..22770907 (25 bp)
AAAACCGCGTCCCATATGCGTGTGA
LOC_Os05g38960
Os.52995.1.S1_at--570--231Chr05:22770829..22770853 (25 bp)
ATATTATGCCTGGTCGTTCTACCGA
LOC_Os05g38960
Os.52995.1.S1_at--421--4071Chr05:22770807..22770831 (25 bp)
CGAGACTCTCCTTTCGTTGTACATA
LOC_Os05g38960
Os.52995.1.S1_at--1040--3111Chr05:22770782..22770806 (25 bp)
AATTTGTCTGATCCGTATTGGCTGC
LOC_Os05g38960
Os.52995.1.S1_at--720--10231Chr05:22770767..22770791 (25 bp)
TATTGGCTGCCGCTGAAGTGCATTG
LOC_Os05g38960
Os.52995.1.S1_at--349--5331Chr05:22770753..22770777 (25 bp)
GAAGTGCATTGTTCAGTACTCCCTC
LOC_Os05g38960
Os.52995.1.S1_at--268--7011Chr05:22770738..22770762 (25 bp)
GTACTCCCTCAGACTCATAATATGG
LOC_Os05g38960
Target Sequence 
TAGCCACCCTGGCTTGTACATGACTCGCGCGGGGAAATCGCCACCGCAGATTTGCATCAAGATTCGGACATATACAACTC
AGGTGGGGAAAAACAACGTCACGAGGGAGAAATACAGCACGCATCACGGAAACGATCGAACGGCAGATGGGCTAGGTGCA
GAAAAACCGCGTCCCATATGCGTGTGAATATGCATGGCAACATGACATGTGTGTACATATTATGCCTGGTCGTTCTACCG
AGACTCTCCTTTCGTTGTACATAAATTTGTCTGATCCGTATTGGCTGCCGCTGAAGTGCATTGTTCAGTACTCCCTCAGA
CTCATAATATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis