Browse Element(s) Details


Os.55717.1.S1_at

Description gb:AK108647.1
DB_XREF= gi:32993856
TID=Os.55717.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-B09, full insert sequence.
FL= gb:AK108647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3899011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38960Os.52995.1.S1_at11/115+22770675..22772303expressed protein
LOC_Os05g38969NANA5+22775014..22775695NA
LOC_Os05g38980Os.53380.1.S1_at11/115+22776978..22781871respiratory burst oxidase protein F, putative, expressed
LOC_Os05g38990Os.55717.1.S1_at11/115+22791057..22792632CCT motif family protein, expressed
LOC_Os05g39000Os.53410.1.S1_at11/115+22795522..22798595kinase interacting protein 1, putative, expressed
LOC_Os05g39010NANA5+22800592..22803611hypothetical protein
LOC_Os05g39020NANA5+22804463..22805301retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_s_at11/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.1.S1_x_at9/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_x_at8/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.4.S1_x_at1/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39040NANA5+22813027..22817860retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0010182biological_processsugar mediated signaling
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55717.1.S1_at--702--5051Chr05:22791601..22791625 (25 bp)
GCAGCAATTGCTACGACAACCAGAG
LOC_Os05g38990
Os.55717.1.S1_at--716--5391Chr05:22791519..22791543 (25 bp)
GAAGCAGCAGCTTGGTTTCGACGTC
LOC_Os05g38990
Os.55717.1.S1_at--987--2011Chr05:22791472..22791496 (25 bp)
ACTACGAGCTGTGCTGTGGGCCAGC
LOC_Os05g38990
Os.55717.1.S1_at--39--531Chr05:22791447..22791471 (25 bp)
ATCGCTGACATGTGCTCAGGGACCT
LOC_Os05g38990
Os.55717.1.S1_at--625--3851Chr05:22791424..22791448 (25 bp)
CTGACCCTGAGCTGATCTGACCTGT
LOC_Os05g38990
Os.55717.1.S1_at--1000--8911Chr05:22791287..22791311 (25 bp)
TGACCTTCTTGTCGCCGTAGTGTAA
LOC_Os05g38990
Os.55717.1.S1_at--960--4491Chr05:22791274..22791298 (25 bp)
GCCGTAGTGTAACTTCGCCTTAAAT
LOC_Os05g38990
Os.55717.1.S1_at--86--5571Chr05:22791205..22791229 (25 bp)
GAAATAGACCCTCTCGTGAACCAAG
LOC_Os05g38990
Os.55717.1.S1_at--936--9891Chr05:22791116..22791140 (25 bp)
TACTTTGATATCTTTCTCCGATAGA
LOC_Os05g38990
Os.55717.1.S1_at--749--9491Chr05:22791102..22791126 (25 bp)
TCTCCGATAGAAGTTTGGCCATGGT
LOC_Os05g38990
Os.55717.1.S1_at--912--8451Chr05:22791087..22791111 (25 bp)
TGGCCATGGTTTTGCTTTGTCACAC
LOC_Os05g38990
Target Sequence 
GCAGCAATTGCTACGACAACCAGAGCCAGAGCCAGTGGTGGGGAACGCCAGCTGGCGCGGCCAATTGGCAGCACCAGCAG
CAGAAGCAGCAGCTTGGTTTCGACGTCGCCGTCGACGGCGACGACGAGGACTACGAGCTGTGCTGTGGGCCAGCATCGCT
GACATGTGCTCAGGGACCTGACCCTGAGCTGATCTGACCTGTCCGGCCACACACGCCGGCAGCAGCTGATTGGCGCTGCC
AGGTGCAAGGAAGGCGGGGGGAGGCAACCGAGCGGCGGCTGCCGTGGACAGTGCGGTGGTCGGAGTGGCGTCGCTGACCT
TCTTGTCGCCGTAGTGTAACTTCGCCTTAAATTAGTTATAGAAGCTAAGAAAAGAGAAGGGTAAAAAAAGGGAAAAGAAA
TAGACCCTCTCGTGAACCAAGCCAAGAAAAACCAGCTTGTTGTTTTTGTGTGGTCAGGATTAGCAATTTAGTAGGCATTT
AGTACTACTTTGATATCTTTCTCCGATAGAAGTTTGGCCATGGTTTTGCTTTGTCACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis