Browse Element(s) Details


Os.53004.1.S1_at

Description gb:AK070393.1
DB_XREF= gi:32980417
TID=Os.53004.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050P07, full insert sequence.
FL= gb:AK070393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1256011/11NADP-dependent oxidoreductase P2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12500OsAffx.8898.1.S1_at1/1112+6886124..6887466transposon protein, putative, Pong sub-class
LOC_Os12g12514OsAffx.19628.1.S1_at11/1112+6888902..6895519oxidoreductase, zinc-binding dehydrogenase family protein
LOC_Os12g12514OsAffx.19629.1.S1_at11/1112+6888902..6895519oxidoreductase, zinc-binding dehydrogenase family protein
LOC_Os12g12514Os.52239.1.S1_at1/1112+6888902..6895519oxidoreductase, zinc-binding dehydrogenase family protein
LOC_Os12g12530NANA12+6898518..6899015hypothetical protein
LOC_Os12g12540Os.40360.1.S1_at9/1112+6901379..6903914hypothetical protein
LOC_Os12g12540Os.40360.1.S1_x_at4/1112+6901379..6903914hypothetical protein
LOC_Os12g12550OsAffx.19631.1.S1_at11/1112+6908509..6908939hypothetical protein
LOC_Os12g12560Os.53004.1.S1_at11/1112+6910166..6912819NADP-dependent oxidoreductase P2, putative, expressed
LOC_Os12g12560OsAffx.29832.2.S1_at1/1112+6910166..6912819NADP-dependent oxidoreductase P2, putative, expressed
LOC_Os12g12570OsAffx.7567.1.S1_at11/1112+6913838..6914215hypothetical protein
LOC_Os12g12580Os.34373.1.S1_at11/1112+6915075..6917439NADP-dependent oxidoreductase P2, putative, expressed
LOC_Os12g12590OsAffx.19632.1.S1_at11/1112+6931547..6935835NADP-dependent oxidoreductase P1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53004.1.S1_at--385--3431Chr12:6912272..6912296 (25 bp)
CAGAGGGTATTGATATCTACTATGA
LOC_Os12g12560
Os.53004.1.S1_at--790--3011Chr12:6912312..6912336 (25 bp)
AATGCTAGACGCAGTACTACCTAAT
LOC_Os12g12560
Os.53004.1.S1_at--160--7011Chr12:6912325..6912349 (25 bp)
GTACTACCTAATATGAGTCTGGGTG
LOC_Os12g12560
Os.53004.1.S1_at--105--9751Chr12:6912333..6912357 (25 bp)
TAATATGAGTCTGGGTGGTCGGATT
LOC_Os12g12560
Os.53004.1.S1_at--425--1151Chr12:6912340..6912364 (25 bp)
AGTCTGGGTGGTCGGATTGTGGCAT
LOC_Os12g12560
Os.53004.1.S1_at--373--411Chr12:6912583..6912607 (25 bp)
ATCAGGCTCTTCACTGGCCGTAGCG
LOC_Os12g12560
Os.53004.1.S1_at--289--8451Chr12:6912597..6912621 (25 bp)
TGGCCGTAGCGTTGGAAAACAGCTC
LOC_Os12g12560
Os.53004.1.S1_at--122--10851Chr12:6912654..6912678 (25 bp)
TTGGCATGGGAGTTGGCATTACGTA
LOC_Os12g12560
Os.53004.1.S1_at--751--7631Chr12:6912661..6912685 (25 bp)
GGGAGTTGGCATTACGTAATAGTAC
LOC_Os12g12560
Os.53004.1.S1_at--367--8291Chr12:6912668..6912692 (25 bp)
GGCATTACGTAATAGTACTAGTTCA
LOC_Os12g12560
Os.53004.1.S1_at--371--6831Chr12:6912718..6912742 (25 bp)
GTTTGGCCAATACCTAGTTAGTACA
LOC_Os12g12560
Target Sequence 
CAGAGGGTATTGATATCTACTATGAGAATGTGGGCGGCAAAATGCTAGACGCAGTACTACCTAATATGAGTCTGGGTGGT
CGGATTGTGGCATGTGGGATGATCTCGCAGTACAACCTGGAGCAGCCCGAGGGGGTGCGAAACCTGTACTACATCGTTAC
CAAGCGCCTGCGCATGGAGGGCTTCCATGTGTTTGACTACTATGACAGGTACTACCGGTTCGAGGAGGAGATGGCTGGGT
ACCTGAAGGAAGAAAAGGTGTCATACGTAGAAGATGTCGTTGAGGGGCTCGACACAGCACCGGCAGCGCTCATCAGGCTC
TTCACTGGCCGTAGCGTTGGAAAACAGCTCGTCGCCGTTGCACGCGAGTGAGACAACGCTGCTTGGCATGGGAGTTGGCA
TTACGTAATAGTACTAGTTCAGAATTCAGAAATTGGGGGCTTTCCAGTTTGGCCAATACCTAGTTAGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis