Browse Element(s) Details


OsAffx.19631.1.S1_at

Description tigr:9640.m01205
TID=OsAffx.19631.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1255011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12500OsAffx.8898.1.S1_at1/1112+6886124..6887466transposon protein, putative, Pong sub-class
LOC_Os12g12514OsAffx.19628.1.S1_at11/1112+6888902..6895519oxidoreductase, zinc-binding dehydrogenase family protein
LOC_Os12g12514OsAffx.19629.1.S1_at11/1112+6888902..6895519oxidoreductase, zinc-binding dehydrogenase family protein
LOC_Os12g12514Os.52239.1.S1_at1/1112+6888902..6895519oxidoreductase, zinc-binding dehydrogenase family protein
LOC_Os12g12530NANA12+6898518..6899015hypothetical protein
LOC_Os12g12540Os.40360.1.S1_at9/1112+6901379..6903914hypothetical protein
LOC_Os12g12540Os.40360.1.S1_x_at4/1112+6901379..6903914hypothetical protein
LOC_Os12g12550OsAffx.19631.1.S1_at11/1112+6908509..6908939hypothetical protein
LOC_Os12g12560Os.53004.1.S1_at11/1112+6910166..6912819NADP-dependent oxidoreductase P2, putative, expressed
LOC_Os12g12560OsAffx.29832.2.S1_at1/1112+6910166..6912819NADP-dependent oxidoreductase P2, putative, expressed
LOC_Os12g12570OsAffx.7567.1.S1_at11/1112+6913838..6914215hypothetical protein
LOC_Os12g12580Os.34373.1.S1_at11/1112+6915075..6917439NADP-dependent oxidoreductase P2, putative, expressed
LOC_Os12g12590OsAffx.19632.1.S1_at11/1112+6931547..6935835NADP-dependent oxidoreductase P1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19631.1.S1_at--507--2951Chr12:6908544..6908568 (25 bp)
AAGGCGATACATGACGTGGTTTCCG
LOC_Os12g12550
OsAffx.19631.1.S1_at--1137--1891Chr12:6908557..6908581 (25 bp)
ACGTGGTTTCCGTCAGAGGACGAGA
LOC_Os12g12550
OsAffx.19631.1.S1_at--581--8111Chr12:6908574..6908598 (25 bp)
GGACGAGATGGAAGTGACTAGCTAC
LOC_Os12g12550
OsAffx.19631.1.S1_at--980--8191Chr12:6908583..6908607 (25 bp)
GGAAGTGACTAGCTACATCTCGGAC
LOC_Os12g12550
OsAffx.19631.1.S1_at--115--8951Chr12:6908588..6908612 (25 bp)
TGACTAGCTACATCTCGGACTTCGT
LOC_Os12g12550
OsAffx.19631.1.S1_at--573--2091Chr12:6908597..6908621 (25 bp)
ACATCTCGGACTTCGTCCAGGGAGA
LOC_Os12g12550
OsAffx.19631.1.S1_at--505--3571Chr12:6908607..6908819 (25 bp)
CTTCGTCCAGGGAGAGGTTTCGACA
LOC_Os12g12550
OsAffx.19631.1.S1_at--871--1011Chr12:6908809..6908833 (25 bp)
AGGTTTCGACAAATAATGGCGTGAT
LOC_Os12g12550
OsAffx.19631.1.S1_at--1004--5311Chr12:6908834..6908858 (25 bp)
GAAGGTGATGTCATCCGGTCACCCG
LOC_Os12g12550
OsAffx.19631.1.S1_at--351--7111Chr12:6908843..6908867 (25 bp)
GTCATCCGGTCACCCGGATTTCAAG
LOC_Os12g12550
OsAffx.19631.1.S1_at--972--9711Chr12:6908863..6908887 (25 bp)
TCAAGGCAGGAAATCTTTGTTTGGG
LOC_Os12g12550
Target Sequence 
AAGGCGATACATGACGTGGTTTCCGTCAGAGGACGAGATGGAAGTGACTAGCTACATCTCGGACTTCGTCCAGGGAGAGG
TTTCGACAAATAATGGCGTGATGAAGGTGATGTCATCCGGTCACCCGGATTTCAAGGCAGGAAATCTTTGTTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis