Browse Element(s) Details


Os.53150.1.S1_at

Description gb:AK071019.1
DB_XREF= gi:32981042
TID=Os.53150.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53150 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080M07, full insert sequence.
FL= gb:AK071019.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4173010/11Proteasome subunit beta type 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41690Os.54259.1.S1_at11/118+26181912..26184983expressed protein
LOC_Os08g41700Os.50600.1.S1_at11/118+26186430..26189682expressed protein
LOC_Os08g41710Os.6151.1.S1_at11/118+26192162..26195774FHA domain containing protein, expressed
LOC_Os08g41720Os.53828.1.S1_at11/118+26199096..26202882Auxin Efflux Carrier family protein
LOC_Os08g41730Os.53150.1.S1_at10/118+26209510..26211681Proteasome subunit beta type 1, putative, expressed
LOC_Os08g41740OsAffx.6107.1.S1_at11/118+26212027..26214380hypothetical protein
LOC_Os08g41750OsAffx.17463.1.S1_at11/118+26218338..26219453F-box domain containing protein
LOC_Os08g41760OsAffx.6108.1.S1_at11/118+26223352..26224461F-box domain containing protein, expressed
LOC_Os08g41770OsAffx.17464.1.S1_at11/118+26234100..26235778hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53150.1.S1_at--773--8451Chr08:26210764..26210788 (25 bp)
TGGCGCAATTACTGTCCAACACGCT
LOC_Os08g41730
Os.53150.1.S1_at--987--3271Chr08:26210795..26210819 (25 bp)
CAAAAGGTTCTTCCCATACTATGCC
LOC_Os08g41730
Os.53150.1.S1_at--639--311Chr08:26210810..26210834 (25 bp)
ATACTATGCCTTCAATGTGTTGGGT
LOC_Os08g41730
Os.53150.1.S1_at--988--3311Chr08:26210964..26210988 (25 bp)
CACATATGATGCTGTTGGGTCTTAT
LOC_Os08g41730
Os.53150.1.S1_at--33--1571Chr08:26211024..26211048 (25 bp)
AGCTTTGATGATGCCTGTTCTGGAC
LOC_Os08g41730
Os.53150.1.S1_at--171--151Chr08:26211072..26211224 (25 bp)
ATTACTACTTCCAGCTCGGGATGCA
LOC_Os08g41730
Os.53150.1.S1_at--14--7991Chr08:26211225..26211249 (25 bp)
GGATGCAGTGACACCATTATCTCAA
LOC_Os08g41730
Os.53150.1.S1_at--327--2931Chr08:26211271..26211295 (25 bp)
AAGGACGTTTTTGCATCAGCCACAG
LOC_Os08g41730
Os.53150.1.S1_at--732--1471Chr08:26211548..26211572 (25 bp)
AGAATGTGCCTTTTCCTTGCCAGAT
LOC_Os08g41730
Os.53150.1.S1_at--394--1791Chr08:26211584..26211608 (25 bp)
ACCGTTGTATTATTCAGTGTTCACC
LOC_Os08g41730
Os.53150.1.S1_at--733--611Chr08:26211661..26211685 (25 bp)
ATGCGTATCTGAATTGCTCACTGAA
NONE
Target Sequence 
TGGCGCAATTACTGTCCAACACGCTCTACTACAAAAGGTTCTTCCCATACTATGCCTTCAATGTGTTGGGTGGACTTGAC
AGCGAAGGTAAAGGATGTGTCTTCACATATGATGCTGTTGGGTCTTATGAAAGGACAGGTTATAGTGCTCAGGGGACAGG
TGCAGCTTTGATGATGCCTGTTCTGGACAATCAGCTAAAATCTCCTAGCCCATTACTACTTCCAGCTCGGGATGCAGTGA
CACCATTATCTCAATCAGATGCTGTCGATCTGGTTAAGGACGTTTTTGCATCAGCCACAGAACGAGACATATACACTGGA
GATAAACTGGAGATTGTTGTCATCAACAGCGCCGGCTCTCACCGTGAGTTCATTGAGCTAAGGAAGGATTAGCGTGGGAT
ACTATCAAACCACCTCGTACCTGTGCAACAACAATACCATTCAGTTACTAGCAGAATGTGCCTTTTCCTTGCCAGATGTA
TTTAAATTACCGTTGTATTATTCAGTGTTCACCATTATTACGGAAGTGGTTACGTAAGACATTTTGTAGTCTTTCTATCT
GAACTATGCGTATCTGAATTGCTCACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis