Browse Element(s) Details


Os.53255.1.S1_at

Description gb:AK071605.1
DB_XREF= gi:32981628
TID=Os.53255.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023102F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102F23, full insert sequence.
FL= gb:AK071605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2590011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25880NANA4+15017845..15019992hypothetical protein
LOC_Os04g25890NANA4+15028107..15035932retrotransposon protein, putative, unclassified
LOC_Os04g25900Os.53255.1.S1_at11/114+15038182..15044423NB-ARC domain containing protein, expressed
LOC_Os04g25910OsAffx.26152.1.S1_at9/114+15048475..15051271hypothetical protein
LOC_Os04g25920OsAffx.26219.1.S1_x_at11/114+15054085..15054714MADS-box family protein, putative
LOC_Os04g25920OsAffx.26219.1.S1_at11/114+15054085..15054714MADS-box family protein, putative
LOC_Os04g25930OsAffx.26219.1.S1_x_at10/114+15058087..15058716hypothetical protein
LOC_Os04g25930OsAffx.26219.1.S1_at10/114+15058087..15058716hypothetical protein
LOC_Os04g25940OsAffx.30013.5.S1_x_at3/114+15062023..15064124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g25940Os.56292.1.S1_x_at2/114+15062023..15064124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g25940Os.56292.1.S1_at1/114+15062023..15064124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g25950NANA4+15069324..15069965transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53255.1.S1_at--305--5831Chr04:15043604..15043628 (25 bp)
GACCTGCTCCTAGACTTTTTGAGTG
LOC_Os04g25900
Os.53255.1.S1_at--691--6111Chr04:15043624..15043648 (25 bp)
GAGTGCTTCGTTCATCTGGAATCGC
LOC_Os04g25900
Os.53255.1.S1_at--38--8731Chr04:15043651..15043675 (25 bp)
TGTCTCTCTCACTTAAGCTGGCACA
LOC_Os04g25900
Os.53255.1.S1_at--603--2331Chr04:15043711..15043735 (25 bp)
AAAGTTCTGATGATCTCCCACTGCA
LOC_Os04g25900
Os.53255.1.S1_at--279--10131Chr04:15043740..15043764 (25 bp)
TATGAAGGTGCTGCCAACACTGCCG
LOC_Os04g25900
Os.53255.1.S1_at--373--4131Chr04:15043763..15043787 (25 bp)
CGCAGTCTCTTTCGCGTTTTAAACT
LOC_Os04g25900
Os.53255.1.S1_at--397--10491Chr04:15043781..15043805 (25 bp)
TTAAACTCTCAAACTGCGGGCACGA
LOC_Os04g25900
Os.53255.1.S1_at--609--4671Chr04:15043796..15043820 (25 bp)
GCGGGCACGAGTTCACAAGGTCTTG
LOC_Os04g25900
Os.53255.1.S1_at--818--9711Chr04:15044011..15044032 (22 bp)
TCAAGACGAGGCATCATGGCGCAAT
LOC_Os04g25900
Os.53255.1.S1_at--338--871Chr04:15044031..15044055 (25 bp)
ATGGCGTTGCATCAGCAGGGCTTTA
LOC_Os04g25900
Os.53255.1.S1_at--277--6591Chr04:15044151..15044175 (25 bp)
GATTCCTTGGTGTATTTTCATTCTG
LOC_Os04g25900
Target Sequence 
GACCTGCTCCTAGACTTTTTGAGTGCTTCGTTCATCTGGAATCGCTCTGTCTCTCTCACTTAAGCTGGCACACCTTGCCA
GATAACATGGAGCAAGTCAGGACTCTCAAAGTTCTGATGATCTCCCACTGCAAGAATATGAAGGTGCTGCCAACACTGCC
GCAGTCTCTTTCGCGTTTTAAACTCTCAAACTGCGGGCACGAGTTCACAAGGTCTTGCAAACAGAATGGAGAAAATTGGG
AAAAGATCCAGCACATTCTCGAAAAAATAATCCTATGATATCCATAGCTCTCAAGACGAGGCATCATGGCGCAATGGCGT
TGCATCAGCAGGGCTTTAGGCATCAATGGGAAGACGATGAAGGGAATGTTGAGCAAGGTGGCAGTTCAGACCTTAAGCCA
AACTGCAGGCTGGGCCGGATGTATGTGTGTTATGATTCCTTGGTGTATTTTCATTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis