Browse Element(s) Details


Os.5329.1.S1_at

Description gb:AK066400.1
DB_XREF= gi:32976418
TID=Os.5329.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013062O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013062O07, full insert sequence.
FL= gb:AK066400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2843011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28400Os.6610.1.S1_at11/117+16598389..16600285expressed protein
LOC_Os07g28410NANA7+16602976..16604470hypothetical protein
LOC_Os07g28420OsAffx.5474.1.S1_at11/117+16615957..16616662hypothetical protein
LOC_Os07g28430Os.5329.1.S1_at11/117+16620968..16623597expressed protein
LOC_Os07g28440Os.7357.1.S1_at11/117+16625927..16629216expressed protein
LOC_Os07g28450Os.46012.2.S1_x_at7/117+16641634..16645921retrotransposon protein, putative, unclassified
LOC_Os07g28450Os.46012.3.S1_x_at6/117+16641634..16645921retrotransposon protein, putative, unclassified
LOC_Os07g28450Os.27088.1.A1_x_at4/117+16641634..16645921retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5329.1.S1_at--683--1451Chr07:16623018..16623042 (25 bp)
AGAAGCTTGCAGTGGCAGCACCAGC
LOC_Os07g28430
Os.5329.1.S1_at--769--1711Chr07:16623037..16623061 (25 bp)
ACCAGCTGCTGTGGAGTCTACATGA
LOC_Os07g28430
Os.5329.1.S1_at--320--3891Chr07:16623098..16623122 (25 bp)
CTGTGCTGGCAATTAGAGTTCGCTT
LOC_Os07g28430
Os.5329.1.S1_at--125--6071Chr07:16623113..16623137 (25 bp)
GAGTTCGCTTCTTATTGTAATCCTG
LOC_Os07g28430
Os.5329.1.S1_at--208--7191Chr07:16623149..16623173 (25 bp)
GTCTGGTCTAGCTATAACCTCATCA
LOC_Os07g28430
Os.5329.1.S1_at--885--2411Chr07:16623205..16623229 (25 bp)
AAAAACTTTCATTTAGCTGTCACTG
LOC_Os07g28430
Os.5329.1.S1_at--151--1211Chr07:16623251..16623275 (25 bp)
AGTTTGATTTAGCTTTGCCGTGCCC
LOC_Os07g28430
Os.5329.1.S1_at--518--4311Chr07:16623280..16623304 (25 bp)
CCTTCAGGCAGATGAGCGGCATTAT
LOC_Os07g28430
Os.5329.1.S1_at--246--7951Chr07:16623306..16623330 (25 bp)
GGATAAATCCTCTCTGACTGACAAT
LOC_Os07g28430
Os.5329.1.S1_at--295--10171Chr07:16623397..16623421 (25 bp)
TATCATTTTATATGGCCTGCACAAT
LOC_Os07g28430
Os.5329.1.S1_at--201--5931Chr07:16623505..16623529 (25 bp)
GAGCTTCGACATGTTATTGGTTATT
LOC_Os07g28430
Target Sequence 
AGAAGCTTGCAGTGGCAGCACCAGCTGCTGTGGAGTCTACATGATTGATGCAGCATTTAGGAGCTGCATAAAGAGCATAA
CTGTGCTGGCAATTAGAGTTCGCTTCTTATTGTAATCCTGAAAAGACTGTAGTCTGGTCTAGCTATAACCTCATCAAGCA
AGAAAAGTGTCTGTGGAAAGAAGCCACAAAAACTTTCATTTAGCTGTCACTGAAATTTTCAGTTTAGGTGTATAGTTTGA
TTTAGCTTTGCCGTGCCCTCTGCCTTCAGGCAGATGAGCGGCATTATTGGATAAATCCTCTCTGACTGACAATATCGCAT
TGTGACTCAAGAAGCCGATGGAAGGATCTGCGAGACTAGATACGAAGCTATTTGTTGTGTATCATTTTATATGGCCTGCA
CAATTGTGTGATTTTGTCAGTTGCATAACATGTGGAAGATCCATAATTTTATGCACTATGGAGATTCAATTACCTNTCCT
NAATGTCTGAGCTTCGACATGTTATTGGTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis