Browse Element(s) Details


Os.7357.1.S1_at

Description gb:AK065880.1
DB_XREF= gi:32975898
TID=Os.7357.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047C23, full insert sequence.
FL= gb:AK121562.1 gb:AK065880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2844011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28410NANA7+16602976..16604470hypothetical protein
LOC_Os07g28420OsAffx.5474.1.S1_at11/117+16615957..16616662hypothetical protein
LOC_Os07g28430Os.5329.1.S1_at11/117+16620968..16623597expressed protein
LOC_Os07g28440Os.7357.1.S1_at11/117+16625927..16629216expressed protein
LOC_Os07g28450Os.46012.2.S1_x_at7/117+16641634..16645921retrotransposon protein, putative, unclassified
LOC_Os07g28450Os.46012.3.S1_x_at6/117+16641634..16645921retrotransposon protein, putative, unclassified
LOC_Os07g28450Os.27088.1.A1_x_at4/117+16641634..16645921retrotransposon protein, putative, unclassified
LOC_Os07g28460Os.22737.1.S1_at9/117+16648800..16655547transposon protein, putative, unclassified, expressed
LOC_Os07g28460OsAffx.28645.1.S1_at9/117+16648800..16655547transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7357.1.S1_at--211--4471Chr07:16626597..16626621 (25 bp)
GCCTCTGTGGCTACAAATGTCAAGT
LOC_Os07g28440
Os.7357.1.S1_at--570--5551Chr07:16626533..16626555 (23 bp)
GAAACCTTCCTTGCAATATACAGTG
LOC_Os07g28440
Os.7357.1.S1_at--932--7611Chr07:16626398..16626422 (25 bp)
GGGAAACTTCTCCAAAGCCTAGCCG
LOC_Os07g28440
Os.7357.1.S1_at--814--6951Chr07:16626374..16626398 (25 bp)
GTAGCTACTACCCAAGGTTCATTCT
LOC_Os07g28440
Os.7357.1.S1_at--611--7891Chr07:16626359..16626383 (25 bp)
GGTTCATTCTTGTCGGTAGATCAGA
LOC_Os07g28440
Os.7357.1.S1_at--920--6451Chr07:16626336..16626360 (25 bp)
GATAATTTACAACGGCCTTGGCTTC
LOC_Os07g28440
Os.7357.1.S1_at--777--3391Chr07:16626191..16626215 (25 bp)
CAGACCTTGGTGCTAGTTTTTCCTT
LOC_Os07g28440
Os.7357.1.S1_at--141--9771Chr07:16626135..16626159 (25 bp)
TAATCTGGTTTCTAGTGTCTGCTAC
LOC_Os07g28440
Os.7357.1.S1_at--674--7451Chr07:16626121..16626145 (25 bp)
GTGTCTGCTACCTGACTACATTTGA
LOC_Os07g28440
Os.7357.1.S1_at--597--7311Chr07:16625990..16626014 (25 bp)
GTGCTGCCACAACTATCAATTTCAT
LOC_Os07g28440
Os.7357.1.S1_at--104--5451Chr07:16625956..16625980 (25 bp)
GAACCGTGGTCTGTGGTGCAATGTA
LOC_Os07g28440
Target Sequence 
GCCTCTGTGGCTACAAATGTCAAGTATGGGCCATATATTGCTGGTTCAATGGCTGGAACGGTACATGAAACCTTCCTTGC
AATATACAGTGGGAAACTTCTCCAAAGCCTAGCCGTAGCTACTACCCAAGGTTCATTCTTGTCGGTAGATCAGATAATTT
ACAACGGCCTTGGCTTCTCAGTTGCTGCAGTTTCTACCGCTGCAATAACTATTTATGCGAAGAAAGCACTTCAAAAACTC
CAAGCAGATGATGAGCTGTGTTGACTCTTGATGAGCACAGGAGATCCTACTCCGGATCAGACCTTGGTGCTAGTTTTTCC
TTAAAATGTACTATATATATACAGAGGTGCTACTAATCTGGTTTCTAGTGTCTGCTACCTGACTACATTTGATCTGAGAG
AGGGTACTGCAACAACTGTAAAGAGAAAATAGAGAACCAGAAAAACACTCCCCCTTTTTTTTTTCTCTTTTTGTTTTTGT
TTTTAACTTGTAGAGAAAGTGCTGCCACAACTATCAATTTCATCAATGTATTGAACCGTGGTCTGTGGTGCAATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis