Browse Element(s) Details


Os.22737.1.S1_at

Description gb:AK072236.1
DB_XREF= gi:32982259
TID=Os.22737.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003N03, full insert sequence.
FL= gb:AK072236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g284609/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28440Os.7357.1.S1_at11/117+16625927..16629216expressed protein
LOC_Os07g28450Os.46012.2.S1_x_at7/117+16641634..16645921retrotransposon protein, putative, unclassified
LOC_Os07g28450Os.46012.3.S1_x_at6/117+16641634..16645921retrotransposon protein, putative, unclassified
LOC_Os07g28450Os.27088.1.A1_x_at4/117+16641634..16645921retrotransposon protein, putative, unclassified
LOC_Os07g28460Os.22737.1.S1_at9/117+16648800..16655547transposon protein, putative, unclassified, expressed
LOC_Os07g28460OsAffx.28645.1.S1_at9/117+16648800..16655547transposon protein, putative, unclassified, expressed
LOC_Os07g28470OsAffx.23036.1.S1_at11/117+16658593..16668290expressed protein
LOC_Os07g28470OsAffx.32203.1.S1_x_at1/117+16658593..16668290expressed protein
LOC_Os07g28480Os.52854.1.S1_at11/117+16672533..16673633glutathione S-transferase GSTU1, putative, expressed
LOC_Os07g28490NANA7+16677773..16679974retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22737.1.S1_at--383--6051Chr07:16653695..16653719 (25 bp)
GAGTTCTTCCGAGATGAAAGCAGAC
LOC_Os07g28460
Os.22737.1.S1_at--1060--5091Chr07:16653857..16653881 (25 bp)
GCACTGAGCCTTCTATGTTTCATTG
LOC_Os07g28460
Os.22737.1.S1_at--559--5271Chr07:16653882..16653906 (25 bp)
GAATGCACGCATCTCTTGTTACAAG
LOC_Os07g28460
Os.22737.1.S1_at--360--7071Chr07:16653906..16653927 (22 bp)
GTAATACGACTTCTATAGAGGTCCA
LOC_Os07g28460
Os.22737.1.S1_at--860--10551Chr07:16655198..16655222 (25 bp)
TTCTTCCATTGTACTCTGCTGAGGA
LOC_Os07g28460
Os.22737.1.S1_at--318--2011Chr07:16655210..16655234 (25 bp)
ACTCTGCTGAGGATCTGCACAACAT
LOC_Os07g28460
Os.22737.1.S1_at--901--2071Chr07:16655231..16655255 (25 bp)
ACATTGGAGCACTTCATGGCCTTGA
LOC_Os07g28460
Os.22737.1.S1_at--967--2271Chr07:16655372..16655396 (25 bp)
AAATCCATCGTCGTTCTTTCATAGG
LOC_Os07g28460
Os.22737.1.S1_at--94--291Chr07:16655427..16655451 (25 bp)
ATAGTTTTGTGGTACTTGATCCATG
LOC_Os07g28460
Os.22737.1.S1_at--698--2371NONE
AAACCGGTGTGTATCATTTCAATTG
NONE
Os.22737.1.S1_at--917--8991NONE
TGAAGATCTTCACAAGCTCATTATG
NONE
Target Sequence 
GAGTTCTTCCGAGATGAAAGCAGACNNTCCAGCTCACCTGGNGATATTGCTATTCTATNTGNTTACTTTTGTTCTTAATT
TGGCATTTGCACTGAGCCTTCTATGTTTCATTGGAATGCACGCATCTCTTGTTACAAGTAATACGACTTCTATAGAGGTC
CATGAGCGAAGGAATTCAGTNTCATGGAAGTATGACCTGGGATGGAGAAAAAACTTGGAGCAGGTTTTTGGCACCNAAAA
GTTGCTCTGGTTTCTTCCATTGTACTCTGCTGAGGATCTGCACAACATTGGAGCACTTCATGGCCTTGAATTCCCTACTC
GATNTGATGCAGTCGNCTGACTACATGTACTTCCACCAGCANCTTGTTCAAAATATTCCATANTGCCNACTCACTTGTAG
ATTAAGCTACNNGATTTCTGTACAGAAATCCATCGTCGTTCTTTCATAGGNAGTGTGAAATNCAATATCATTCTTTTTGT
ATAGTTTTGTGGTACTTGATCCATGGACCATACTAAATTNCACAAAATCATGTTAATTCTTTGGTTGATTTAAACCGGTG
TGTATCATTTCAATTGAAGATCTTCACAAGCTCATTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis