Browse Element(s) Details


OsAffx.23036.1.S1_at

Description gb:AK073933.1
DB_XREF= gi:32983956
TID=OsAffx.23036.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076F17, full insert sequence.
FL= gb:AK073933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2847011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28450Os.46012.2.S1_x_at7/117+16641634..16645921retrotransposon protein, putative, unclassified
LOC_Os07g28450Os.46012.3.S1_x_at6/117+16641634..16645921retrotransposon protein, putative, unclassified
LOC_Os07g28450Os.27088.1.A1_x_at4/117+16641634..16645921retrotransposon protein, putative, unclassified
LOC_Os07g28460Os.22737.1.S1_at9/117+16648800..16655547transposon protein, putative, unclassified, expressed
LOC_Os07g28460OsAffx.28645.1.S1_at9/117+16648800..16655547transposon protein, putative, unclassified, expressed
LOC_Os07g28470OsAffx.23036.1.S1_at11/117+16658593..16668290expressed protein
LOC_Os07g28470OsAffx.32203.1.S1_x_at1/117+16658593..16668290expressed protein
LOC_Os07g28480Os.52854.1.S1_at11/117+16672533..16673633glutathione S-transferase GSTU1, putative, expressed
LOC_Os07g28490NANA7+16677773..16679974retrotransposon protein, putative, unclassified
LOC_Os07g28500OsAffx.20823.2.S1_at4/117+16681055..16681926retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28500OsAffx.20823.2.S1_x_at4/117+16681055..16681926retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28510Os.27691.2.S1_x_at2/117+16683217..16689054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28510Os.27691.1.S1_x_at1/117+16683217..16689054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28530NANA7+16692797..16696269retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23036.1.S1_at--232--3651Chr07:16667419..16667443 (25 bp)
CTTCAGGGCCTTCTTTTGCTTCATT
LOC_Os07g28470
OsAffx.23036.1.S1_at--1072--4891Chr07:16667436..16667460 (25 bp)
GCTTCATTAGAATCCTCCACTGTTA
LOC_Os07g28470
OsAffx.23036.1.S1_at--16--7711Chr07:16667496..16667520 (25 bp)
GGGTCGAAACATTCTTATCTCTAAT
LOC_Os07g28470
OsAffx.23036.1.S1_at--329--10052Chr07:16667526..16667550 (25 bp)
TAGTTATCTTAGCTCTTTCAGGGAA
LOC_Os07g28470
OsAffx.23036.1.S1_at--1120--4812Chr07:16667537..16667561 (25 bp)
GCTCTTTCAGGGAATCTTCTCTAGA
LOC_Os07g28470
OsAffx.23036.1.S1_at--55--1372Chr07:16667559..16667583 (25 bp)
AGAGCCCTACCTGGAGTACTAGGAT
LOC_Os07g28470
OsAffx.23036.1.S1_at--896--9891Chr07:16667575..16667599 (25 bp)
TACTAGGATCTTTCCTTATTCCTCC
LOC_Os07g28470
OsAffx.23036.1.S1_at--906--10411Chr07:16667590..16667614 (25 bp)
TTATTCCTCCCAGAGACTGATCATG
LOC_Os07g28470
OsAffx.23036.1.S1_at--1067--1951Chr07:16667605..16667913 (25 bp)
ACTGATCATGTCATTCCAGAGGGAC
LOC_Os07g28470
OsAffx.23036.1.S1_at--496--3691Chr07:16667939..16667963 (25 bp)
CTATTGGAGCTTGGCTGGCGCGAAA
LOC_Os07g28470
OsAffx.23036.1.S1_at--1105--571Chr07:16668089..16668113 (25 bp)
ATCCAATCTGTTTGGTCGTTCGGGA
LOC_Os07g28470
Target Sequence 
CTTCAGGGCCTTCTTTTGCTTCATTAGAATCCTCCACTGTTATAACAAGGAAACAAGTCCATAAATCACAGTTAGAGGGG
TCGAAACATTCTTATCTCTAATCAATTTAGTTATCTTAGCTCTTTCAGGGAATCTTCTCTAGAGCCCTACCTGGAGTACT
AGGATCTTTCCTTATTCCTCCCAGAGACTGATCATGTCATTCCAGAGGGACAGGGGAAAGCCAAAGCATAGTTAGGCTAT
TGGAGCTTGGCTGGCGCGAAACATATTGCGAGATTATTACCATGAGGAATAGAAAGGTGGTCTGGCGTGCAAGCTTGTTT
GTAGTTAGAATTGTACAGTTTTTTTTTTCCTTTTCTATGTAATTTAACTCCTATCAATGTAACGTCATCCAATCTGTTTG
GTCGTTCGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis