Browse Element(s) Details


Os.53422.1.S1_at

Description gb:AK072542.1
DB_XREF= gi:32982565
TID=Os.53422.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132O14, full insert sequence.
FL= gb:AK072542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1546011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15430OsAffx.12055.1.S1_at10/112+8640325..8644849hypothetical protein
LOC_Os02g15440OsAffx.2622.1.S1_at11/112+8652189..8652676hypothetical protein
LOC_Os02g15450OsAffx.24268.1.S1_at6/112+8657953..8658393hypothetical protein
LOC_Os02g15460Os.53422.1.S1_at11/112+8659225..8660520expressed protein
LOC_Os02g15460OsAffx.24268.1.S1_s_at11/112+8659225..8660520expressed protein
LOC_Os02g15460OsAffx.24268.1.S1_at1/112+8659225..8660520expressed protein
LOC_Os02g15470NANA2+8664543..8667607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15480NANA2+8669169..8671062transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15490Os.47463.1.S1_x_at6/112+8671153..8674094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15490Os.14491.2.S1_x_at5/112+8671153..8674094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15500OsAffx.12055.2.S1_at11/112+8679388..8680777expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53422.1.S1_at--250--4111Chr02:8659555..8659579 (25 bp)
CGAACTTCAAGGTACTATCATGGAT
LOC_Os02g15460
Os.53422.1.S1_at--458--10171Chr02:8659540..8659564 (25 bp)
TATCATGGATACTACCCGCCTTCAA
LOC_Os02g15460
Os.53422.1.S1_at--386--991Chr02:8659505..8659529 (25 bp)
AGGAGGTTTCACACCTTCGATATAT
LOC_Os02g15460
Os.53422.1.S1_at--46--231Chr02:8659486..8659510 (25 bp)
ATATATATTGAAAGAGGCCCCTCAC
LOC_Os02g15460
Os.53422.1.S1_at--740--8411Chr02:8659471..8659495 (25 bp)
GGCCCCTCACCTTGGAGACATCATA
LOC_Os02g15460
Os.53422.1.S1_at--158--991Chr02:8659445..8659469 (25 bp)
AGGAGATTCCTCATCTTCAAGGTAT
LOC_Os02g15460
Os.53422.1.S1_at--900--6511Chr02:8659311..8659335 (25 bp)
GATATTAGAGCACTGATGTACCACT
LOC_Os02g15460
Os.53422.1.S1_at--1095--8751Chr02:8659295..8659319 (25 bp)
TGTACCACTCAAAAGCCATCAATTT
LOC_Os02g15460
Os.53422.1.S1_at--325--1691Chr02:8659282..8659306 (25 bp)
AGCCATCAATTTTTAGAGGAGTCTA
LOC_Os02g15460
Os.53422.1.S1_at--919--1471Chr02:8659253..8659277 (25 bp)
AGAATCTCCATGTCGATAGTCTCCA
LOC_Os02g15460
Os.53422.1.S1_at--345--7211Chr02:8659242..8659266 (25 bp)
GTCGATAGTCTCCACCTTTAAGTAA
LOC_Os02g15460
Target Sequence 
CGAACTTCAAGGTACTATCATGGATACTACCCGCCTTCAAGTTATAATGAAGGAGGTTTCACACCTTCGATATATATTGA
AAGAGGCCCCTCACCTTGGAGACATCATAAAGGAGATTCCTCATCTTCAAGGTATGATGGAGAAGGTTCCTCACCTCCAA
GTCACTATGAAGATAGCTACCGGCCTTCTAATGTGTCATGGAATCGAGTGTTCTCCGCCTTATGGAGATGGTAAATAGCA
CAAAGATATTAGAGCACTGATGTACCACTCAAAAGCCATCAATTTTTAGAGGAGTCTATGAAAGAATCTCCATGTCGATA
GTCTCCACCTTTAAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis