Browse Element(s) Details


Os.53550.1.S1_at

Description gb:AK073236.1
DB_XREF= gi:32983259
TID=Os.53550.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033010F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033010F19, full insert sequence.
FL= gb:AK073236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2837011/11retrotransposon protein, putative, LINE subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28340Os.6007.1.S1_at11/119+17206463..17208026expressed protein
LOC_Os09g28354Os.27176.1.S1_at11/119+17220425..17227957HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g28354Os.26442.1.S1_at1/119+17220425..17227957HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g28370Os.53550.1.S1_at11/119+17230297..17242998retrotransposon protein, putative, LINE subclass, expressed
LOC_Os09g28370OsAffx.12117.1.S1_at2/119+17230297..17242998retrotransposon protein, putative, LINE subclass, expressed
LOC_Os09g28380NANA9+17243666..17243968hypothetical protein
LOC_Os09g28390NANA9+17251028..17254513Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53550.1.S1_at--952--9991Chr09:17234537..17234561 (25 bp)
TAGCCCATCCACTGCTATATCAAAA
LOC_Os09g28370
Os.53550.1.S1_at--1024--5551Chr09:17234334..17234358 (25 bp)
GAAAGCTCCTTCTTCTAGCACTAAA
LOC_Os09g28370
Os.53550.1.S1_at--876--3031Chr09:17234151..17234175 (25 bp)
AATCCTGGCAACGATGCTGGTGGCA
LOC_Os09g28370
Os.53550.1.S1_at--128--10411Chr09:17233978..17234002 (25 bp)
TTTTGGATGCCACAGTTGCTGCCTA
LOC_Os09g28370
Os.53550.1.S1_at--981--5511Chr09:17233924..17233948 (25 bp)
GAAAATCAGCCGTTCTGTAGTGCCT
LOC_Os09g28370
Os.53550.1.S1_at--396--8711Chr09:17233909..17233933 (25 bp)
TGTAGTGCCTTTGCAAACTGTCCTA
LOC_Os09g28370
Os.53550.1.S1_at--1162--151Chr09:17233882..17233906 (25 bp)
ATTATACTGGTGTCCTGTGTTTGAC
LOC_Os09g28370
Os.53550.1.S1_at--128--10671Chr09:17233862..17233886 (25 bp)
TTGACACCGTTTCCACTAGACTTAT
LOC_Os09g28370
Os.53550.1.S1_at--750--7351Chr09:17233816..17233840 (25 bp)
GTGAACTGGCACTGATCATGTAACT
LOC_Os09g28370
Os.53550.1.S1_at--227--9931Chr09:17233750..17233774 (25 bp)
TACTGGTTGTTATTTCACGGCGATT
LOC_Os09g28370
Os.53550.1.S1_at--346--3131Chr09:17233725..17233749 (25 bp)
AATTTACCTCCGAATTATCAGTCGC
LOC_Os09g28370
Target Sequence 
TAGCCCATCCACTGCTATATCAAAACACAAAGACCTGGAAATAGAGTCTGCTTCAAAGACCACTACAGAGGTTCAGGATG
AAGAGGAAATAGAAGATGAGGATGTCGATCACCTCAGCCTCACACAGAAAGCTCCTTCTTCTAGCACTAAACAAAGCACT
TCTAAGAGCTACAAAAAAAGGCCTAGGCCATCTCCTGGCACAGGTGCTGCGAAGAAGCTATTCAAAGACAATCCTGGCAA
CGATGCTGGTGGCAGTGCCATCAACCAAGCCTGATATGTTATGGACCAAACAAGCTTACTTTTGGATGCCACAGTTGCTG
CCTACACCAGACAGCTCTTCAGTGAGAGGAGAAGAAAATCAGCCGTTCTGTAGTGCCTTTGCAAACTGTCCTATTATTAT
ACTGGTGTCCTGTGTTTGACACCGTTTCCACTAGACTTATTCTTTTGCAAAAAGACTTAATGTGAACTGGCACTGATCAT
GTAACTAGGATTCTGCATTATCATAGTTATACTATGATAATCCTGAATACTGGTTGTTATTTCACGGCGATTAATTTACC
TCCGAATTATCAGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis