Browse Element(s) Details


Os.6007.1.S1_at

Description gb:AK108731.1
DB_XREF= gi:32993940
TID=Os.6007.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D03, full insert sequence.
FL= gb:AK108731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2834011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28300Os.21902.1.S1_at11/119+17181866..17187377Remorin, C-terminal region family protein, expressed
LOC_Os09g28310Os.15711.1.S1_at11/119+17188975..17193011bZIP transcription factor family protein, expressed
LOC_Os09g28320OsAffx.30064.1.S1_at11/119+17195184..17196285hypothetical protein
LOC_Os09g28330Os.35344.18.S1_x_at8/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330Os.35344.3.S1_x_at8/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330OsAffx.22940.5.S1_x_at5/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330OsAffx.22940.5.S1_at5/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28340Os.6007.1.S1_at11/119+17206463..17208026expressed protein
LOC_Os09g28354Os.27176.1.S1_at11/119+17220425..17227957HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g28354Os.26442.1.S1_at1/119+17220425..17227957HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g28370Os.53550.1.S1_at11/119+17230297..17242998retrotransposon protein, putative, LINE subclass, expressed
LOC_Os09g28370OsAffx.12117.1.S1_at2/119+17230297..17242998retrotransposon protein, putative, LINE subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6007.1.S1_at--771--5611Chr09:17207010..17207034 (25 bp)
GACAAGCTCGGATCGGTGCTCAAGA
LOC_Os09g28340
Os.6007.1.S1_at--530--9352Chr02:739199..739263 (25 bp)
TCGACGCGCTGTTCCTAAAAACGGA
NONE
Os.6007.1.S1_at--213--2372Chr02:739257..739289 (25 bp)
AAACGGACCGGTGCTCGGACTCACT
NONE
Os.6007.1.S1_at--429--2011Chr09:17206847..17206871 (25 bp)
ACTCACTCCGGCGAGCAGGGTGGAC
LOC_Os09g28340
Os.6007.1.S1_at--860--7511Chr09:17206828..17206852 (25 bp)
GTGGACCTCCGAGGACGTCTCGGAT
LOC_Os09g28340
Os.6007.1.S1_at--399--9511Chr09:17206811..17206835 (25 bp)
TCTCGGATGCGTTCGGGCTTGACCT
LOC_Os09g28340
Os.6007.1.S1_at--310--8291Chr09:17206796..17206820 (25 bp)
GGCTTGACCTCCGTCGGCGAAAGGA
LOC_Os09g28340
Os.6007.1.S1_at--340--7051Chr09:17206582..17206606 (25 bp)
GTAAACTAGCCCATGTTCGTGTGCA
LOC_Os09g28340
Os.6007.1.S1_at--460--9631Chr09:17206530..17206554 (25 bp)
TCATGTGCACAATGAACCGTTAATT
LOC_Os09g28340
Os.6007.1.S1_at--833--9771Chr09:17206504..17206528 (25 bp)
TAAGACACGGTCTCCCAGAAATGAA
LOC_Os09g28340
Os.6007.1.S1_at--1069--5511Chr09:17206482..17206506 (25 bp)
GAAAACTGCATATTGCCGGATTAAA
LOC_Os09g28340
Target Sequence 
GACAAGCTCGGATCGGTGCTCAAGAAAGGTGGCTGGAGGGACAGAGAGGTCGACGAGATGGTCGAGGTCACCGCCTCCGG
ACTGTTCGACGGCGAGGAGGCACCCCCAGCCGACGCCGACGCGGTGCTCGACGCGCTGTTCCTAAAAACGGACCGGTGCT
CGGACTCACTCCGGCGAGCAGGGTGGACCTCCGAGGACGTCTCGGATGCGTTCGGGCTTGACCTCCGTCGGCGAAAGGAG
CAGCCGCGGCCAGCNGTGCAGATACCGCCGGAGATCGCCGCCAAGGTCCAGCGCCTCGCGCAAGCGGTGGCGAGGCCGTG
ACCTCACCGGGCACCGGCCGAACATGTGGGGCCCTGCCGTTTCTTCCTCGTCTCTGNGTTTTTTTCCCCGCATAGGAGGA
ATTAAACAACACTTATGTCAAGTGAAAAGTAAACTAGCCCATGTTCGTGTGCATGAATACACAAGTAAATTAAGATGTGT
TCATGTGCACAATGAACCGTTAATTGTAAGACACGGTCTCCCAGAAATGAAAACTGCATATTGCCGGATTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis