Browse Element(s) Details


Os.21902.1.S1_at

Description gb:AK072474.1
DB_XREF= gi:32982497
TID=Os.21902.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121I15, full insert sequence.
FL= gb:AK072474.1 gb:AK073880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2830011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28260NANA9+17157640..17163352retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28270NANA9+17166042..17167607hypothetical protein
LOC_Os09g28280Os.37075.1.S1_at11/119+17170659..171718062-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28290OsAffx.6428.1.S1_at11/119+17174189..17174891hypothetical protein
LOC_Os09g28300Os.21902.1.S1_at11/119+17181866..17187377Remorin, C-terminal region family protein, expressed
LOC_Os09g28310Os.15711.1.S1_at11/119+17188975..17193011bZIP transcription factor family protein, expressed
LOC_Os09g28320OsAffx.30064.1.S1_at11/119+17195184..17196285hypothetical protein
LOC_Os09g28330Os.35344.18.S1_x_at8/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330Os.35344.3.S1_x_at8/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330OsAffx.22940.5.S1_x_at5/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330OsAffx.22940.5.S1_at5/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28340Os.6007.1.S1_at11/119+17206463..17208026expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21902.1.S1_at--422--2251Chr09:17186810..17186834 (25 bp)
AAATTCTTCTGCATACATCCCATGT
LOC_Os09g28300
Os.21902.1.S1_at--123--551Chr09:17186826..17186850 (25 bp)
ATCCCATGTGCCTGATTGATATCTT
LOC_Os09g28300
Os.21902.1.S1_at--1103--9771Chr09:17186868..17186892 (25 bp)
TAAGGTCCTCCTCTATCATTCATTA
LOC_Os09g28300
Os.21902.1.S1_at--1061--9591Chr09:17186887..17186911 (25 bp)
TCATTACCCATTACCAACATTCTAG
LOC_Os09g28300
Os.21902.1.S1_at--294--9591Chr09:17186954..17186978 (25 bp)
TCATTTGCACCACAATTCCAACGGA
LOC_Os09g28300
Os.21902.1.S1_at--697--10531Chr09:17187030..17187054 (25 bp)
TTCATGCTGGAAAACTCTACTGGAT
LOC_Os09g28300
Os.21902.1.S1_at--900--8951Chr09:17187193..17187217 (25 bp)
TGACAAGCTCTTCGCAGAACAACTC
LOC_Os09g28300
Os.21902.1.S1_at--797--3771Chr09:17187215..17187239 (25 bp)
CTCTCCCATTTCTGTAATGAGCTGT
LOC_Os09g28300
Os.21902.1.S1_at--898--5891Chr09:17187233..17187257 (25 bp)
GAGCTGTTTCTTGTAATTCCTATTG
LOC_Os09g28300
Os.21902.1.S1_at--1013--10211Chr09:17187253..17187277 (25 bp)
TATTGCAACACATAGGCGTTACTGA
LOC_Os09g28300
Os.21902.1.S1_at--58--10151Chr09:17187329..17187353 (25 bp)
TATCGCTGCTCCAACTTCAAAATAA
LOC_Os09g28300
Target Sequence 
AAATTCTTCTGCATACATCCCATGTGCCTGATTGATATCTTAGCACAATGATAATTGATAAGGTCCTCCTCTATCATTCA
TTACCCATTACCAACATTCTAGATGCTATGAGTTTGTGTGCGATGAAAACAAAGCAGATATGTATCATTTGCACCACAAT
TCCAACGGATAGATAAGAAGGGAATGTTTCAGTCAGAGGGAATACAGTGCCTTACTGTGATTCATGCTGGAAAACTCTAC
TGGATTGTGAAAGGGAACCAGGTGGAATGCAATAGATTTAGCTAGCGTATGCTACATTTGCATACACAGTTACAATAGCA
TGTGTTGGAGAAAAATATAGGAATACAGGAAAATAGAGATTCTGTTTGAATTTCATGGCAATTTGACAAGCTCTTCGCAG
AACAACTCTCCCATTTCTGTAATGAGCTGTTTCTTGTAATTCCTATTGCAACACATAGGCGTTACTGAATGTTGATAAAT
GATATTGCCATCGCAATTTTTTTTTANNAAAATAATCGCTATCGCTGCTCCAACTTCAAAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis