Browse Element(s) Details


Os.53592.1.S1_s_at

Description gb:AK073461.1
DB_XREF= gi:32983484
TID=Os.53592.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040O17, full insert sequence.
FL= gb:AK073461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3085011/11glutaredoxin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30840Os.53662.1.S1_at11/112+18379408..18384495RNA pseudouridylate synthase family protein, expressed
LOC_Os02g30850OsAffx.26282.1.S1_s_at11/112+18408428..18409451glutaredoxin family protein, putative, expressed
LOC_Os02g30850Os.53592.1.S1_s_at11/112+18408428..18409451glutaredoxin family protein, putative, expressed
LOC_Os02g30860OsAffx.2814.1.S1_at11/112+18409814..18410331hypothetical protein
LOC_Os02g30870OsAffx.24516.1.S1_at11/112+18413065..18413929hypothetical protein
LOC_Os02g30880NANA2+18421042..18426637retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g30890NANA2+18429233..18429433hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0048441biological_processpetal development
GO:0048448biological_processstamen morphogenesis
GO:0048451biological_processpetal formation
GO:0048453biological_processsepal formation
GO:0048455biological_processstamen formation
GO:0005489molecular_functionelectron transporter activity
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53592.1.S1_s_at--675--511Chr02:18409173..18409197 (25 bp)
ATCGATCGAGATACAGCCCATTTAC
LOC_Os02g30850
Os.53592.1.S1_s_at--647--6031Chr02:18409180..18409204 (25 bp)
GAGATACAGCCCATTTACACGGTGC
LOC_Os02g30850
Os.53592.1.S1_s_at--546--9851Chr02:18409195..18409219 (25 bp)
TACACGGTGCTAGCTAATTAATCAG
LOC_Os02g30850
Os.53592.1.S1_s_at--1098--10251Chr02:18409238..18409262 (25 bp)
TTTGAGAGTGAGTGAGCTAGAGCTA
LOC_Os02g30850
Os.53592.1.S1_s_at--925--7472Chr10:2904565..2904584 (20 bp)
GTGTGTGTGCTTTTTTCTTCACGAC
NONE
Os.53592.1.S1_s_at--28--10392Chr10:2904572..2904780 (25 bp)
TTTTCTTCACGACGACTGCCTCTGT
NONE
Os.53592.1.S1_s_at--168--4011Chr02:18409376..18409400 (25 bp)
CGTGCGCTGGATTTGCTTGCTTTGA
LOC_Os02g30850
Os.53592.1.S1_s_at--510--10731Chr02:18409388..18409412 (25 bp)
TTGCTTGCTTTGATGCTGCATGCTA
LOC_Os02g30850
Os.53592.1.S1_s_at--57--4891Chr02:18409394..18409418 (25 bp)
GCTTTGATGCTGCATGCTATTGCTA
LOC_Os02g30850
Os.53592.1.S1_s_at--647--4871Chr02:18409409..18409433 (25 bp)
GCTATTGCTAGCTACTGAAATTACT
LOC_Os02g30850
Os.53592.1.S1_s_at--584--5571Chr02:18409425..18409449 (25 bp)
GAAATTACTACTACCAGTGTTTTAT
LOC_Os02g30850
Target Sequence 
ATCGATCGAGATACAGCCCATTTACACGGTGCTAGCTAATTAATCAGTGTGTGAGTGAGTGTGTGTTTGAGAGTGAGTGA
GCTAGAGCTAGAAGAAGAGAGATCGAGGTTGGTGTGTGTGTGCTTTTTTCTTCACGACGACTGCCTCTGTCCGTCTCGTG
CATGCTTCGCGCGCGCGCGCGCGCATGTGGTTGTTTGTTGGCGCGTGCGCTGGATTTGCTTGCTTTGATGCTGCATGCTA
TTGCTAGCTACTGAAATTACTACTACCAGTGTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53592.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis