Browse Element(s) Details


Os.53608.1.A1_at

Description gb:AK073563.1
DB_XREF= gi:32983586
TID=Os.53608.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033041K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041K18, full insert sequence.
FL= gb:AK073563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3250011/11permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32470OsAffx.13151.1.S1_x_at2/118+19972487..19973515hypothetical protein
LOC_Os08g32480OsAffx.13097.1.S1_s_at4/118+19973865..19976613transposon protein, putative, Mutator sub-class
LOC_Os08g32490NANA8+19995263..19995622hypothetical protein
LOC_Os08g32500Os.53608.1.A1_at11/118+19996905..20000825permease, putative, expressed
LOC_Os08g32510NANA8+20003667..20004136hypothetical protein
LOC_Os08g32520Os.43236.1.S1_at9/118+20011464..20012574expressed protein
LOC_Os08g32530OsAffx.17296.1.S1_x_at11/118+20018462..20019765hypothetical protein
LOC_Os08g32540OsAffx.29475.2.S1_s_at11/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32540OsAffx.29475.2.S1_at5/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53608.1.A1_at--202--2591Chr08:20000123..20000147 (25 bp)
AACGAGTATACATCGGTTGCCGGTT
LOC_Os08g32500
Os.53608.1.A1_at--415--7911Chr08:20000137..20000161 (25 bp)
GGTTGCCGGTTATGGTCCAGTGCAC
LOC_Os08g32500
Os.53608.1.A1_at--667--1771Chr08:20000162..20000288 (25 bp)
ACCGGCGCTCGATGGTTCAATGACA
LOC_Os08g32500
Os.53608.1.A1_at--990--2351Chr08:20000311..20000335 (25 bp)
AAAGCCGTTCGTCGCAGGGCTCATT
LOC_Os08g32500
Os.53608.1.A1_at--60--8331Chr08:20000328..20000352 (25 bp)
GGCTCATTGCGTACTTCCTAGACAA
LOC_Os08g32500
Os.53608.1.A1_at--117--5631Chr08:20000348..20000372 (25 bp)
GACAACACTATCCAGAGGCGCGACA
LOC_Os08g32500
Os.53608.1.A1_at--448--971Chr08:20000417..20000441 (25 bp)
AGGAGCTTCAAGACGGACACCCGGA
LOC_Os08g32500
Os.53608.1.A1_at--66--9911Chr08:20000453..20000477 (25 bp)
TACTCTCTGCCGTTCAACTTGAACA
LOC_Os08g32500
Os.53608.1.A1_at--117--5931Chr08:20000539..20000563 (25 bp)
GAGCTTCAGCTTCTACTTGTATGGG
LOC_Os08g32500
Os.53608.1.A1_at--786--9071Chr08:20000698..20000722 (25 bp)
TGCTTCTGGTTGATCTGTTGTTCTT
LOC_Os08g32500
Os.53608.1.A1_at--1056--5991Chr08:20000730..20000754 (25 bp)
GAGAGCTTTCTGCTAGGAGTTCCCC
LOC_Os08g32500
Target Sequence 
AACGAGTATACATCGGTTGCCGGTTATGGTCCAGTGCACACCGGCGCTCGATGGTTCAATGACATGATAAATGTACCNTT
CGCGTCAAAGCCGTTCGTCGCAGGGCTCATTGCGTACTTCCTAGACAACACTATCCAGAGGCGCGACAATGGGGTGAGGA
GAGACAGGGGATACCACTGGTGGGACAAGTTCAGGAGCTTCAAGACGGACACCCGGAGCGAGGAGTTCTACTCTCTGCCG
TTCAACTTGAACAAGTTCTTCCCTTCCGTGTGATCCGCCTTAGCTCGGGTTCGGACCGCAGCAGAATTGGGGGGGAGCTT
CAGCTTCTACTTGTATGGGGGCATGTTTTTTCGATGTTGGTTCGATGGTTTTGTAAATCTTAGGATGGGTGAATTTTGGC
TGGTTGGGGGACTAATCTGTCATGCCACATATTATTGCATTTTGGTTCAGTACAGAGGTCAGGGAGGGGCTGCTGCTTCT
GGTTGATCTGTTGTTCTTGANTNTTGAGAGCTTTCTGCTAGGAGTTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53608.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis