Browse Element(s) Details


Os.5365.1.S1_at

Description gb:AK068924.1
DB_XREF= gi:32978948
TID=Os.5365.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170E21, full insert sequence.
FL= gb:AK068924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2104011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21009OsAffx.24357.1.S1_at11/112+12432283..12451253Vacuolar cation/proton exchanger 1c, putative, expressed
LOC_Os02g21009OsAffx.12141.1.S1_at11/112+12432283..12451253Vacuolar cation/proton exchanger 1c, putative, expressed
LOC_Os02g21030OsAffx.24358.1.S1_at11/112+12462366..12462976hypothetical protein
LOC_Os02g21040Os.5365.1.S1_at11/112+12464427..12466553Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g21050NANA2+12473377..12473610hypothetical protein
LOC_Os02g21060OsAffx.485.1.S1_at1/112+12480724..12485768retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5365.1.S1_at--207--9091Chr02:12465844..12465868 (25 bp)
TGCTACAACGTGTCCGGCGTGGAGA
LOC_Os02g21040
Os.5365.1.S1_at--95--6151Chr02:12465874..12465898 (25 bp)
GAGGTGCCGGAGTTCTCCCTCCTGT
LOC_Os02g21040
Os.5365.1.S1_at--36--9471Chr02:12465914..12465938 (25 bp)
TCTGGGACTTCCCGGCGGAGAACTA
LOC_Os02g21040
Os.5365.1.S1_at--947--3951Chr02:12465929..12465953 (25 bp)
CGGAGAACTACTTCGTCCGCCTCGA
LOC_Os02g21040
Os.5365.1.S1_at--1024--1851Chr02:12466130..12466154 (25 bp)
ACGAGAGGATCCACCAATTTGAAGG
LOC_Os02g21040
Os.5365.1.S1_at--1101--6351Chr02:12466137..12466161 (25 bp)
GATCCACCAATTTGAAGGTCCTCAT
LOC_Os02g21040
Os.5365.1.S1_at--937--5311Chr02:12466150..12466174 (25 bp)
GAAGGTCCTCATTTTGATCGAATTC
LOC_Os02g21040
Os.5365.1.S1_at--550--9251Chr02:12466155..12466179 (25 bp)
TCCTCATTTTGATCGAATTCGGGTT
LOC_Os02g21040
Os.5365.1.S1_at--562--8591Chr02:12466173..12466197 (25 bp)
TCGGGTTTAGGTGTGGCCAAATTTG
LOC_Os02g21040
Os.5365.1.S1_at--1016--5631Chr02:12466257..12466281 (25 bp)
GACACGCAAAGTTGTATGTAGCACA
LOC_Os02g21040
Os.5365.1.S1_at--801--6951Chr02:12466274..12466298 (25 bp)
GTAGCACAAAGGTTTCGAAATCTCC
LOC_Os02g21040
Target Sequence 
TGCTACAACGTGTCCGGCGTGGAGAGGGTGGAGGTGCCGGAGTTCTCCCTCCTGTTCGCCGACGGCGCCGTCTGGGACTT
CCCGGCGGAGAACTACTTCGTCCGCCTCGACCCCGACGGCATCATGTGCCTCGCCGTCCTCGGCACGCCGCGCTCCGCCA
TGTCCATCATCGGCAACTTCCAGCAGCAGAACTTCCACGTCCTCTACGACCTGCAGAACAACCGCCTCGGCTTTGCGCCG
CGGCGGTGCGCCGAGGTGTAAGCCGGCGCCGGCGCCGGCGCCGGCCACGAGAGGATCCACCAATTTGAAGGTCCTCATTT
TGATCGAATTCGGGTTTAGGTGTGGCCAAATTTGGGGCAAATTTGGGTGTAGAAATTTTGGGGGCGGAAATTAAAGGTCA
GGAGGAGGGGGTTGACACGCAAAGTTGTATGTAGCACAAAGGTTTCGAAATCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis