Browse Element(s) Details


Os.53892.1.S1_at

Description gb:AK100661.1
DB_XREF= gi:32985870
TID=Os.53892.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111N02, full insert sequence.
FL= gb:AK100661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3441011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34390OsAffx.16553.1.S1_at11/117+20614020..20618903ankyrin repeat family protein, putative, expressed
LOC_Os07g34400OsAffx.16554.1.S1_at11/117+20623397..20624993lipase class 3 family protein, putative
LOC_Os07g34410Os.53892.1.S1_at11/117+20639805..20644204retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g34420OsAffx.28745.1.S1_at11/117+20645291..20645911lipase class 3 family protein, putative
LOC_Os07g34430NANA7+20648608..20649326hypothetical protein
LOC_Os07g34440OsAffx.28747.1.S1_at11/117+20650553..20652352lipase class 3, putative
LOC_Os07g34450Os.26886.3.S1_x_at6/117+20654923..20658140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34450Os.26886.1.S1_x_at5/117+20654923..20658140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34460Os.53142.1.S1_at2/117+20659951..20661588transposon protein, putative, unclassified
LOC_Os07g34470NANA7+20663345..20663938transposon protein, putative, unclassified
LOC_Os07g34480Os.53142.1.S1_at2/117+20666198..20669010retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53892.1.S1_at--416--6857Chr08:24288003..24288027 (25 bp)
GTTTCCTTCTGCATGTTGTCAGTTT
NONE
Os.53892.1.S1_at--808--10437Chr08:24288031..24288055 (25 bp)
TTAGCTGCCGAATGACCTGGTTTCA
NONE
Os.53892.1.S1_at--953--9397Chr08:24288095..24288119 (25 bp)
TCGTTCCGTTCAGTTGTGCATGTAA
NONE
Os.53892.1.S1_at--23--10432Chr07:20644922..20644946 (25 bp)
TTAGGTTACTGTCGTTGTCCGGCAA
NONE
Os.53892.1.S1_at--642--6735Chr08:24283528..24283548 (21 bp)
GTTCTTTCCGTTTTGCTGACAGCGA
NONE
Os.53892.1.S1_at--82--5651Chr07:20640066..20640090 (25 bp)
GACAGCGATATCATGGTGCCACGGA
LOC_Os07g34410
Os.53892.1.S1_at--510--6891Chr07:20639968..20639992 (25 bp)
GTATACCGCGCCGATGATGAACTGG
LOC_Os07g34410
Os.53892.1.S1_at--68--6111Chr07:20639931..20639955 (25 bp)
GAGTCGTCCTTGATCACTCGGAGGA
LOC_Os07g34410
Os.53892.1.S1_at--508--4571Chr07:20639876..20639900 (25 bp)
GCGCGAGAGCGTTGGTATGCACCCT
LOC_Os07g34410
Os.53892.1.S1_at--838--6771Chr07:20639845..20639869 (25 bp)
GTTACTGTCGTTCTCCATGGTATAG
LOC_Os07g34410
Os.53892.1.S1_at--525--7851Chr07:20639827..20639851 (25 bp)
GGTATAGACGCCTTTCACAAGACAG
LOC_Os07g34410
Target Sequence 
GTTTCCTTCTGCATGTTGTCAGTTTTGTTTAGCTGCCGAATGACCTGGTTTCAGATCGTGGGATGGCGCGGTCAGTAGCC
GATCCGGGTTGCTCGTTCCGTTCAGTTGTGCATGTAACAAACTCCGTTTTGGTGGAGGAGAATAAAGAGTGAAAACAGAA
AAGCAGCAGAGGTTGCGCTGCACAAAAATTCTACTTTGTTCTTCAGTTCTTGACGTTTCCCGAACTTCTTTAGGTTACTG
TCGTTGTCCGGCAATTTTCAGAGTGAGCGAGTGTGAGCGATTTCAGAGTTTGTTCTTTCCGTTTTGCTGACAGCGATATC
ATGGTGCCACGGAAGGCGACAACGTAGTGAGGAGCCAACGGGTGGCGGCCGGGCTTGCTGGCANGCAGAGCCGGCAGCAC
ATGCTCGTATACCGCGCCGATGATGAACTGGTCGTTGTTGTTGGAGTCGTCCTTGATCACTCGGAGGAGGCGGAAGCCAA
AGCTCTCCCACCAAGCCGGCGCGAGAGCGTTGGTATGCACCCTGCGCCTGTTACTGTCGTTCTCCATGGTATAGACGCCT
TTCACAAGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis