Browse Element(s) Details


Os.53930.1.S1_at

Description gb:AK100889.1
DB_XREF= gi:32986098
TID=Os.53930.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023129A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023129A05, full insert sequence.
FL= gb:AK100889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1273011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12700NANA9+7266567..7269153retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12710Os.21026.1.S1_at11/119+7270228..7275920THO complex subunit 3, putative, expressed
LOC_Os09g12720Os.51293.1.S1_at11/119+7276255..7281393Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g12720Os.51930.1.S1_at11/119+7276255..7281393Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g12730Os.53930.1.S1_at11/119+7292011..7299542RNA recognition motif family protein, expressed
LOC_Os09g12740NANA9+7305638..7306849retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12750Os.6430.1.S1_at11/119+7315075..7321298myb family transcription factor, putative, expressed
LOC_Os09g12750OsAffx.7666.1.S1_at1/119+7315075..7321298myb family transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009911biological_processpositive regulation of flower development
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53930.1.S1_at--1088--7591Chr09:7293550..7293574 (25 bp)
GGGAAATCCAGCTCATTCTTCCATG
LOC_Os09g12730
Os.53930.1.S1_at--520--10671Chr09:7293532..7293556 (25 bp)
TTCCATGCCTTTGAGATCGTTCGTC
LOC_Os09g12730
Os.53930.1.S1_at--404--8191Chr09:7293397..7293421 (25 bp)
GGAAGACCATCACGGAGACCCTCAA
LOC_Os09g12730
Os.53930.1.S1_at--403--2351Chr09:7293373..7293397 (25 bp)
AAAGCGCCTTCAAGCAACATTGCAA
LOC_Os09g12730
Os.53930.1.S1_at--778--7151Chr09:7292244..7292268 (25 bp)
GTCTGAAACTGCTGGTGGGCACCCA
LOC_Os09g12730
Os.53930.1.S1_at--323--5091Chr09:7292226..7292250 (25 bp)
GCACCCATACCTATACCGGATGTTT
LOC_Os09g12730
Os.53930.1.S1_at--201--2331Chr09:7292155..7292179 (25 bp)
AAAGCTTACTCCTAGGTGGCAACCA
LOC_Os09g12730
Os.53930.1.S1_at--719--1751Chr09:7292131..7292155 (25 bp)
ACCTCCGTTGTCTTGTCTGTATAAG
LOC_Os09g12730
Os.53930.1.S1_at--938--2811Chr09:7292109..7292133 (25 bp)
AAGATTGCACCGTTCATCTTTTCTC
LOC_Os09g12730
Os.53930.1.S1_at--800--8991Chr09:7292052..7292076 (25 bp)
TGAATACCACTTCCCTTTTTGCATT
LOC_Os09g12730
Os.53930.1.S1_at--488--331Chr09:7292026..7292050 (25 bp)
ATACATCATGCATTCGTCTCATCGA
LOC_Os09g12730
Target Sequence 
GGGAAATCCAGCTCATTCTTCCATGCCTTTGAGATCGTTCGTCCCTCCTCTTCCTGAAGGCCCTCCACCCCTTAGGCAGC
ACACATCAAGTGCTCTACAAGCGCAACCTGCACTTCCCTCTGGACCACAGACTAGCCAGCAACCGTCTGCTCAGGAAGAC
CATCACGGAGACCCTCAAAAGCGCCTTCAAGCAACATTGCAATTGGCAGCAACCCTACTTCAGCAGATACAGCAACAATC
TAAACCTGGTGGCCAGAAGTAGATGCGAGGTTAAGGAAATTTGCAGCCTGCAAGGATCATATGGTGATATTTTCTCCTTA
TTACTGAAGAGCCTGAGAGTCTGAAACTGCTGGTGGGCACCCATACCTATACCGGATGTTTTGTTAACATAGGTTCTGCT
ATGAATTAGCATTGCAGTTTAATTTTGAAAGCTTACTCCTAGGTGGCAACCACCTCCGTTGTCTTGTCTGTATAAGATTG
CACCGTTCATCTTTTCTCTCTGTTTTTGTGTTAATCAATGCATAGACCCATGAATACCACTTCCCTTTTTGCATTCATAC
ATCATGCATTCGTCTCATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis